Detail Information

Basic Information:


  VIRBase ID:  

VHID00082254

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:           ZNF497:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H2-3p ZNF497
miRBase
Accession/Entrez ID		 MIMAT0008399 162968
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF497
chr19:58872177(-) A-I      intronic
chr19:58872233(-) A-I      intronic
chr19:58871095(-) A-I      intronic
chr19:58872178(-) A-I      intronic
chr19:58872216(-) A-I      intronic
chr19:58871110(-) A-I      intronic
chr19:58871891(-) A-I      intronic
chr19:58872421(-) A-I      intronic
chr19:58871336(-) A-I      intronic
chr19:58872286(-) A-I      intronic
chr19:58872023(-) A-I      intronic
chr19:58871176(-) A-I      intronic
chr19:58872420(-) A-I      intronic
chr19:58871156(-) A-I      intronic
chr19:58872344(-) A-I      intronic
chr19:58871182(-) A-I      intronic
chr19:58872515(-) A-I      intronic
chr19:58872343(-) A-I      intronic
chr19:58871083(-) A-I      intronic
chr19:58871217(-) A-I      intronic
chr19:58872033(-) A-I      intronic
chr19:58872304(-) A-I      intronic
chr19:58872861(-) A-I      intronic
chr19:58872112(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF497
chr19:58872286(-) A-I intron -    15342557
chr19:58872304(-) A-I intron -    15342557
chr19:58872312(-) A-I intron -    15342557
chr19:58872343(-) A-I intron -    15342557
chr19:58872344(-) A-I intron -    15342557
chr19:58872785(-) A-I intron -    15342557

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF497
chr19:58865989-58865990(-) m6A 3'UTR       25456834//24981863//22608085
chr19:58865994-58865995(-) m6A 3'UTR       25456834//24981863//22608085
chr19:58866035-58866036(-) m6A 3'UTR       25456834//24981863//22608085
chr19:58866072-58866073(-) m6A 3'UTR       24209618//25456834//24981863//22608085
chr19:58866305-58866306(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr19:58866333-58866334(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr19:58866346-58866347(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr19:58866390-58866391(-) m6A 3'UTR       25456834//24981863//27371828//22608085
chr19:58866494-58866495(-) m6A 3'UTR       24981863//22608085
chr19:58866516-58866517(-) m6A 3'UTR       24981863//22608085
chr19:58866535-58866536(-) m6A 3'UTR       24981863//22608085
chr19:58866587-58866588(-) m6A 3'UTR       24981863//22608085
chr19:58866670-58866671(-) m6A 3'UTR       22608085
chr19:58866706-58866707(-) m6A 3'UTR       -
chr19:58866895-58866896(-) m6A 3'UTR       22608085
chr19:58866941-58866942(-) m6A 3'UTR       24981863//22608085
chr19:58867018-58867019(-) m6A 3'UTR       24981863//22608085
chr19:58867028-58867029(-) m6A 3'UTR       24981863//22608085
chr19:58867215-58867216(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58867297-58867298(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58867355-58867356(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58867422-58867423(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58867473-58867474(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868252-58868253(-) m6A CDS       24981863//27371828//27773536//22608085
chr19:58868312-58868313(-) m6A CDS       25456834//24981863//27371828//27773536//22608085
chr19:58868420-58868421(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868454-58868455(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868726-58868727(-) m6A CDS       25456834//24981863//27371828//27773536//22608085
chr19:58868803-58868804(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868873-58868874(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868931-58868932(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58868979-58868980(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr19:58869401-58869402(-) m6A CDS//intron       25456834//24981863//27773536
chr19:58869475-58869476(-) m6A 5'UTR//intron       25456834//24981863
chr19:58869515-58869516(-) m6A 5'UTR//intron       25456834//24981863
chr19:58869542-58869543(-) m6A 5'UTR//intron       25456834//24981863
chr19:58869582-58869583(-) m6A 5'UTR//intron       -
chr19:58869618-58869619(-) m6A 5'UTR//intron       27773536
chr19:58869911-58869912(-) m6A 5'UTR//intron       25456834//27773536
chr19:58870568-58870569(-) m6A intron       25456834//24981863//27773536//22608085
chr19:58874138-58874139(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF497
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H2-3p
Interactor2: ZNF497

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...