Basic Information:

  VIRBase ID:  

VHID00081964

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          SPATA33:  NR_073515     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	SPATA33
miRBase Accession/Entrez ID	MIMAT0008399	124045
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C16orf55

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPATA33	chr16:89732345(+) A-I      intronic chr16:89732211(+) A-I      intronic chr16:89732212(+) A-I      intronic chr16:89732323(+) A-I      intronic chr16:89730317(+) A-I      intronic chr16:89732328(+) A-I      intronic chr16:89732337(+) A-I      intronic chr16:89728605(+) A-I      intronic chr16:89728925(+) A-I      intronic chr16:89728949(+) A-I      intronic chr16:89729015(+) A-I      intronic chr16:89729069(+) A-I      intronic chr16:89729331(+) A-I      intronic chr16:89729666(+) A-I      intronic chr16:89730326(+) A-I      intronic chr16:89730420(+) A-I      intronic chr16:89730452(+) A-I      intronic chr16:89731516(+) A-I      intronic chr16:89730366(+) A-I      intronic chr16:89731944(+) A-I      intronic chr16:89732367(+) A-I      intronic chr16:89731603(+) A-I      intronic chr16:89732332(+) A-I      intronic chr16:89732327(+) A-I      intronic chr16:89728423(+) A-I      intronic chr16:89734640(+) A-I      intronic chr16:89730325(+) A-I      intronic chr16:89732492(+) A-I      intronic chr16:89729916(+) A-I      intronic chr16:89731543(+) A-I      intronic chr16:89730390(+) A-I      intronic chr16:89729704(+) A-I      intronic chr16:89734710(+) A-I      intronic chr16:89730406(+) A-I      intronic chr16:89730433(+) A-I      intronic chr16:89732439(+) A-I      intronic chr16:89731521(+) A-I      intronic chr16:89732395(+) A-I      intronic chr16:89732440(+) A-I      intronic chr16:89732373(+) A-I      intronic chr16:89734599(+) A-I      intronic chr16:89731586(+) A-I      intronic chr16:89730351(+) A-I      intronic chr16:89729055(+) A-I      intronic chr16:89728450(+) A-I      intronic chr16:89729766(+) A-I      intronic chr16:89729760(+) A-I      intronic chr16:89729921(+) A-I      intronic chr16:89732480(+) A-I      intronic chr16:89730380(+) A-I      intronic chr16:89728932(+) A-I      intronic chr16:89732302(+) A-I      intronic chr16:89729733(+) A-I      intronic chr16:89732410(+) A-I      intronic chr16:89730289(+) A-I      intronic chr16:89732911(+) A-I      intronic chr16:89730865(+) A-I      intronic chr16:89736797(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPATA33	chr16:89724345-89724346(+) m6A CDS//intron       24209618 chr16:89724769-89724770(+) m6A 3'UTR//CDS//intron       24284625 chr16:89724792-89724793(+) m6A 3'UTR//CDS//intron       24284625 chr16:89724907-89724908(+) m6A 3'UTR//intron       24284625 chr16:89724921-89724922(+) m6A 3'UTR//intron       24284625 chr16:89726121-89726122(+) m6A 3'UTR//intron       25456834//22608085 chr16:89726135-89726136(+) m6A 3'UTR//intron       25456834//24981863//22608085 chr16:89726191-89726192(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89726253-89726254(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89726266-89726267(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89726293-89726294(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr16:89726313-89726314(+) m6A 3'UTR//intron       24284625//25456834 chr16:89726353-89726354(+) m6A 3'UTR//intron       24284625 chr16:89726544-89726545(+) m6A 3'UTR//intron       24284625//25456834 chr16:89726621-89726622(+) m6A 3'UTR//intron       24284625//25456834 chr16:89726670-89726671(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr16:89726710-89726711(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr16:89726774-89726775(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr16:89726807-89726808(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr16:89726868-89726869(+) m6A 3'UTR//intron       24284625//25456834 chr16:89726881-89726882(+) m6A 3'UTR//intron       24284625 chr16:89726901-89726902(+) m6A 3'UTR//intron       - chr16:89727020-89727021(+) m6A 3'UTR//intron       22608085 chr16:89727032-89727033(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89727048-89727049(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89727166-89727167(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr16:89727207-89727208(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr16:89727268-89727269(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085 chr16:89727280-89727281(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085 chr16:89727313-89727314(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//22608085 chr16:89727428-89727429(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr16:89727468-89727469(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr16:89727503-89727504(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr16:89727549-89727550(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr16:89727675-89727676(+) m6A 3'UTR//intron       24981863//22608085 chr16:89735697-89735698(+) m6A 3'UTR//CDS       24284625 chr16:89735815-89735816(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863 chr16:89735834-89735835(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863 chr16:89735861-89735862(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863 chr16:89735905-89735906(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr16:89735956-89735957(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:89736042-89736043(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:89736169-89736170(+) m6A 3'UTR       24284625//24209618//25456834 chr16:89736232-89736233(+) m6A 3'UTR       24284625//24209618 chr16:89736601-89736602(+) m6A 3'UTR       24981863 chr16:89736664-89736665(+) m6A 3'UTR       24284625//22608085 chr16:89736890-89736891(+) m6A 3'UTR       24981863//22608085 chr16:89736935-89736936(+) m6A 3'UTR       24981863//22608085 chr16:89736960-89736961(+) m6A 3'UTR       24981863//22608085 chr16:89737005-89737006(+) m6A 3'UTR       22608085 chr16:89737060-89737061(+) m6A 3'UTR       22608085 chr16:89737176-89737177(+) m6A 3'UTR       24209618//25456834//22608085 chr16:89737193-89737194(+) m6A 3'UTR       24209618//25456834//22608085 chr16:89737276-89737277(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:89737282-89737283(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:89737297-89737298(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr16:89737349-89737350(+) m6A 3'UTR       24209618//25456834//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPATA33	Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: SPATA33

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg