Basic Information:

  VIRBase ID:  

VHID00081938

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          ZFYVE27:  NM_001174122     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	ZFYVE27
miRBase Accession/Entrez ID	MIMAT0008399	118813
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PROTRUDIN//SPG33

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZFYVE27	chr10:99498880(+) A-I      intronic chr10:99514170(+) A-I      intronic chr10:99501836(+) A-I      intronic chr10:99501663(+) A-I      intronic chr10:99501769(+) A-I      intronic chr10:99501706(+) A-I      intronic chr10:99498905(+) A-I      intronic chr10:99501833(+) A-I      intronic chr10:99501869(+) A-I      intronic chr10:99501837(+) A-I      intronic chr10:99501770(+) A-I      intronic chr10:99498933(+) A-I      intronic chr10:99499061(+) A-I      intronic chr10:99499100(+) A-I      intronic chr10:99501807(+) A-I      intronic chr10:99501619(+) A-I      intronic chr10:99519736(+) A-I      3'UTR chr10:99514144(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZFYVE27	chr10:99496941-99496942(+) m6A 5'UTR//exon       24981863 chr10:99496956-99496957(+) m6A 5'UTR//exon       24981863 chr10:99510126-99510127(+) m6A CDS//exon       - chr10:99510198-99510199(+) m6A CDS//exon       - chr10:99511148-99511149(+) m6A CDS//exon       24209618//24981863 chr10:99512616-99512617(+) m6A CDS//intron       24209618//24981863 chr10:99512846-99512847(+) m6A CDS       24209618//24981863 chr10:99519320-99519321(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr10:99519333-99519334(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99519376-99519377(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99519440-99519441(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99519616-99519617(+) m6A 3'UTR       24284625//24981863 chr10:99519635-99519636(+) m6A 3'UTR       24284625//24981863 chr10:99519743-99519744(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr10:99519767-99519768(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr10:99519783-99519784(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr10:99520299-99520300(+) m6A 3'UTR       - chr10:99520329-99520330(+) m6A 3'UTR       - chr10:99520336-99520337(+) m6A 3'UTR       - chr10:99520409-99520410(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZFYVE27	Chromatin K562 cells     - Exosome Blood     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: ZFYVE27

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg