Basic Information:

  VIRBase ID:  

VHID00081242

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          EXO5:  NM_001346948     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	EXO5
miRBase Accession/Entrez ID	MIMAT0008399	64789
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf176//DEM1//Exo V//hExo5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EXO5	chr1:40978407(+) A-I      intronic chr1:40977680(+) A-I      intronic chr1:40977570(+) A-I      intronic chr1:40976760(+) A-I      intronic chr1:40979698(+) A-I      intronic chr1:40979461(+) A-I      intronic chr1:40979426(+) A-I      intronic chr1:40979364(+) A-I      intronic chr1:40979360(+) A-I      intronic chr1:40979325(+) A-I      intronic chr1:40979287(+) A-I      intronic chr1:40978508(+) A-I      intronic chr1:40978360(+) A-I      intronic chr1:40977785(+) A-I      intronic chr1:40977748(+) A-I      intronic chr1:40979837(+) A-I      intronic chr1:40979831(+) A-I      intronic chr1:40979769(+) A-I      intronic chr1:40979741(+) A-I      intronic chr1:40978440(+) A-I      intronic chr1:40979765(+) A-I      intronic chr1:40979841(+) A-I      intronic chr1:40979466(+) A-I      intronic chr1:40982125(+) A-I      3'UTR chr1:40982133(+) A-I      3'UTR chr1:40982060(+) A-I      3'UTR chr1:40982145(+) A-I      3'UTR chr1:40982098(+) A-I      3'UTR chr1:40977756(+) A-I      intronic chr1:40976653(+) A-I      intronic chr1:40978343(+) A-I      intronic chr1:40977811(+) A-I      intronic chr1:40979285(+) A-I      intronic chr1:40977823(+) A-I      intronic chr1:40978449(+) A-I      intronic chr1:40979361(+) A-I      intronic chr1:40977716(+) A-I      intronic chr1:40979934(+) A-I      intronic chr1:40978550(+) A-I      intronic chr1:40979390(+) A-I      intronic chr1:40978374(+) A-I      intronic chr1:40978305(+) A-I      intronic chr1:40979398(+) A-I      intronic chr1:40976658(+) A-I      intronic chr1:40978488(+) A-I      intronic chr1:40977732(+) A-I      intronic chr1:40977735(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EXO5	chr1:40974817-40974818(+) m6A 5'UTR//exon//intron       - chr1:40974869-40974870(+) m6A 5'UTR//exon//intron       - chr1:40975307-40975308(+) m6A 5'UTR//intron       24981863 chr1:40980225-40980226(+) m6A CDS//exon       24209618//24981863//22608085 chr1:40980240-40980241(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:40980271-40980272(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr1:40980304-40980305(+) m6A CDS       24209618//25456834//24981863//22608085 chr1:40980383-40980384(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40980400-40980401(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40980484-40980485(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980494-40980495(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980501-40980502(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980559-40980560(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980590-40980591(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980596-40980597(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:40980661-40980662(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:40980788-40980789(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40980803-40980804(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40980810-40980811(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40980856-40980857(+) m6A CDS       24284625//24209618//24981863//22608085 chr1:40981034-40981035(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:40981063-40981064(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:40981110-40981111(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr1:40981264-40981265(+) m6A CDS       24209618//24981863//22608085 chr1:40981401-40981402(+) m6A 3'UTR       24209618//22608085 chr1:40981490-40981491(+) m6A 3'UTR       24209618//22608085 chr1:40981562-40981563(+) m6A 3'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EXO5	Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: EXO5

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg