Basic Information:

  VIRBase ID:  

VHID00081203

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          HERPUD2:  NM_022373     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	HERPUD2
miRBase Accession/Entrez ID	MIMAT0008399	64224
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HERPUD2	chr7:35733372(-) A-I      intronic chr7:35725796(-) A-I      intronic chr7:35726488(-) A-I      intronic chr7:35733320(-) A-I      intronic chr7:35733344(-) A-I      intronic chr7:35721733(-) A-I      intronic chr7:35721740(-) A-I      intronic chr7:35721746(-) A-I      intronic chr7:35721751(-) A-I      intronic chr7:35718106(-) A-I      intronic chr7:35725329(-) A-I      intronic chr7:35725370(-) A-I      intronic chr7:35725489(-) A-I      intronic chr7:35672815(-) A-I      3'UTR chr7:35672844(-) A-I      3'UTR chr7:35672825(-) A-I      3'UTR chr7:35672855(-) A-I      3'UTR chr7:35672848(-) A-I      3'UTR chr7:35686060(-) A-I      intronic chr7:35724751(-) A-I      intronic chr7:35694752(-) A-I      intronic chr7:35726493(-) A-I      intronic chr7:35733525(-) A-I      intronic chr7:35725426(-) A-I      intronic chr7:35721770(-) A-I      intronic chr7:35724694(-) A-I      intronic chr7:35678777(-) A-I      intronic chr7:35726587(-) A-I      intronic chr7:35726618(-) A-I      intronic chr7:35724770(-) A-I      intronic chr7:35733475(-) A-I      intronic chr7:35730362(-) A-I      intronic chr7:35730333(-) A-I      intronic chr7:35672774(-) A-I      3'UTR chr7:35672841(-) A-I      3'UTR chr7:35672952(-) A-I      3'UTR chr7:35672872(-) A-I      3'UTR chr7:35672897(-) A-I      3'UTR chr7:35672883(-) A-I      3'UTR chr7:35672744(-) A-I      3'UTR chr7:35672814(-) A-I      3'UTR chr7:35733316(-) A-I      intronic chr7:35730270(-) A-I      intronic chr7:35678750(-) A-I      intronic chr7:35733430(-) A-I      intronic chr7:35724769(-) A-I      intronic chr7:35726513(-) A-I      intronic chr7:35733386(-) A-I      intronic chr7:35730297(-) A-I      intronic chr7:35733315(-) A-I      intronic chr7:35726558(-) A-I      intronic chr7:35730163(-) A-I      intronic chr7:35694605(-) A-I      intronic chr7:35725488(-) A-I      intronic chr7:35733421(-) A-I      intronic chr7:35730357(-) A-I      intronic chr7:35721773(-) A-I      intronic chr7:35694423(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HERPUD2	chr7:35694605(-) A-G intron -    22484847 chr7:35725168(-) A-G intron -    22484847 chr7:35725208(-) A-G intron -    22484847 chr7:35726493(-) A-G intron -    22484847 chr7:35726587(-) A-G intron -    22484847 chr7:35726588(-) A-G intron -    22484847 chr7:35726618(-) A-G intron -    22484847 chr7:35733412(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HERPUD2	chr7:35672703-35672704(-) m6A 3'UTR       24981863 chr7:35672772-35672773(-) m6A 3'UTR       24981863 chr7:35673022-35673023(-) m6A 3'UTR       27773535 chr7:35673085-35673086(-) m6A 3'UTR       24981863//26404942//27773535 chr7:35673135-35673136(-) m6A 3'UTR       24981863//26404942//27773535//22608085 chr7:35673290-35673291(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr7:35673933-35673934(-) m6A CDS//exon       - chr7:35673943-35673944(-) m6A CDS//exon       - chr7:35674954-35674955(-) m6A CDS//exon       24981863//27773535 chr7:35674971-35674972(-) m6A CDS//exon       24981863//27773535 chr7:35678073-35678074(-) m6A CDS//exon       27773535 chr7:35708179-35708180(-) m6A exon//intron       27773535 chr7:35709895-35709896(-) m6A CDS//intron       27773535 chr7:35712823-35712824(-) m6A CDS//intron       24284625//24209618//27773535 chr7:35712852-35712853(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr7:35733796-35733797(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr7:35733832-35733833(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35733843-35733844(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35733848-35733849(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35733867-35733868(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35733935-35733936(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35733963-35733964(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35734040-35734041(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35734056-35734057(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr7:35734145-35734146(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr7:35734184-35734185(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085 chr7:35734548-35734549(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr7:35734623-35734624(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr7:35734735-35734736(-) m6A 5'UTR//intron       24981863 chr7:35735033-35735034(-) m6A 5'UTR       24981863 chr7:35735062-35735063(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HERPUD2	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: HERPUD2

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg