Basic Information:

  VIRBase ID:  

VHID00080859

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          ELAC1:  NM_018696     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	ELAC1
miRBase Accession/Entrez ID	MIMAT0008399	55520
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	D29

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ELAC1	chr18:48511208(+) A-I      intronic chr18:48506236(+) A-I      intronic chr18:48506231(+) A-I      intronic chr18:48506214(+) A-I      intronic chr18:48506190(+) A-I      intronic chr18:48506174(+) A-I      intronic chr18:48510037(+) A-I      intronic chr18:48510094(+) A-I      intronic chr18:48510103(+) A-I      intronic chr18:48510130(+) A-I      intronic chr18:48511235(+) A-I      intronic chr18:48511251(+) A-I      intronic chr18:48506524(+) A-I      intronic chr18:48509553(+) A-I      intronic chr18:48509555(+) A-I      intronic chr18:48512493(+) A-I      intronic chr18:48511265(+) A-I      intronic chr18:48511222(+) A-I      intronic chr18:48506369(+) A-I      intronic chr18:48509635(+) A-I      intronic chr18:48512584(+) A-I      intronic chr18:48506498(+) A-I      intronic chr18:48506513(+) A-I      intronic chr18:48507087(+) A-I      intronic chr18:48511246(+) A-I      intronic chr18:48509724(+) A-I      intronic chr18:48509986(+) A-I      intronic chr18:48510211(+) A-I      intronic chr18:48510003(+) A-I      intronic chr18:48509985(+) A-I      intronic chr18:48512489(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ELAC1	chr18:48494982-48494983(+) m6A exon//intron       25456834//22608085 chr18:48510504-48510505(+) m6A CDS//intron       24981863 chr18:48510571-48510572(+) m6A CDS//intron       24284625//24981863//22608085 chr18:48510609-48510610(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr18:48510623-48510624(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr18:48510631-48510632(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr18:48510673-48510674(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr18:48510709-48510710(+) m6A CDS//intron       24284625//25456834//24981863//22608085 chr18:48510741-48510742(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22608085 chr18:48510760-48510761(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr18:48510770-48510771(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr18:48510783-48510784(+) m6A CDS//intron       24981863//22608085 chr18:48510795-48510796(+) m6A CDS//intron       24981863//22608085 chr18:48510820-48510821(+) m6A CDS//intron       24981863//22608085 chr18:48510904-48510905(+) m6A CDS       24981863//22608085 chr18:48510919-48510920(+) m6A CDS       24981863//22608085 chr18:48510927-48510928(+) m6A CDS       22608085 chr18:48513154-48513155(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr18:48513171-48513172(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr18:48513213-48513214(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085 chr18:48513319-48513320(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr18:48513347-48513348(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr18:48513364-48513365(+) m6A CDS       24209618//25456834//24981863//22608085 chr18:48513456-48513457(+) m6A 3'UTR       24209618//24981863//22608085 chr18:48513504-48513505(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ELAC1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: ELAC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg