Basic Information:

  VIRBase ID:  

VHID00080238

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          MMD:  NM_012329     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	MMD
miRBase Accession/Entrez ID	MIMAT0008399	23531
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MMA//MMD1//PAQR11

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MMD	chr17:53483893(-) A-I      intronic chr17:53475134(-) A-I      intronic chr17:53486222(-) A-I      intronic chr17:53477833(-) A-I      intronic chr17:53474601(-) A-I      intronic chr17:53482729(-) A-I      intronic chr17:53477847(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MMD	chr17:53471027-53471028(-) m6A 3'UTR       27773535 chr17:53471042-53471043(-) m6A 3'UTR       27773535 chr17:53471103-53471104(-) m6A 3'UTR       27773535 chr17:53471213-53471214(-) m6A 3'UTR       27773535 chr17:53471426-53471427(-) m6A 3'UTR       24981863 chr17:53471431-53471432(-) m6A 3'UTR       24981863 chr17:53471454-53471455(-) m6A 3'UTR       24981863 chr17:53471465-53471466(-) m6A 3'UTR       24981863 chr17:53497667-53497668(-) m6A exon//intron       24209618//27371828//22608085 chr17:53497670-53497671(-) Am exon//intron       - chr17:53497687-53497688(-) m6A exon//intron       24209618//22608085 chr17:53497709-53497710(-) m6A exon//intron       24209618//24981863//22608085 chr17:53497742-53497743(-) m6A exon//intron       24209618//24981863//22608085 chr17:53497814-53497815(-) m6A exon//intron       27773536//22608085 chr17:53499161-53499162(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MMD	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: MMD

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg