Basic Information:

  VIRBase ID:  

VHID00080223

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          CBX6:  NM_014292     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	CBX6
miRBase Accession/Entrez ID	MIMAT0008399	23466
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CBX6	chr22:39258645-39258646(-) m6A 3'UTR       27371828 chr22:39258655-39258656(-) m6A 3'UTR       27371828//27773536 chr22:39258684-39258685(-) m6A 3'UTR       27371828//27773536 chr22:39258795-39258796(-) m6A 3'UTR       27371828//27773536 chr22:39258872-39258873(-) m6A 3'UTR       24981863//26404942//27773535//27371828 chr22:39258958-39258959(-) m6A 3'UTR       27773535//27371828 chr22:39259559-39259560(-) m6A 3'UTR       24284625 chr22:39259821-39259822(-) m6A 3'UTR       - chr22:39260011-39260012(-) m6A 3'UTR       24209618//27773536 chr22:39260049-39260050(-) m6A 3'UTR       24209618//24981863//27773535//27773536 chr22:39260250-39260251(-) m6A 3'UTR       24981863//27773535 chr22:39260256-39260257(-) m6A 3'UTR       24981863//27773535 chr22:39260835-39260836(-) m6A 3'UTR       24284625 chr22:39261161-39261162(-) m6A 3'UTR       24284625 chr22:39261179-39261180(-) m6A 3'UTR       24284625//24981863 chr22:39261204-39261205(-) m6A 3'UTR       24284625//24981863 chr22:39261329-39261330(-) m6A 3'UTR       24284625//24981863 chr22:39261357-39261358(-) m6A 3'UTR       24284625//24981863 chr22:39261378-39261379(-) m6A 3'UTR       24284625//24981863 chr22:39261486-39261487(-) m6A 3'UTR       24284625//22575960 chr22:39261499-39261500(-) m6A 3'UTR       24284625//22575960 chr22:39261577-39261578(-) m6A 3'UTR       24284625//24981863//22575960 chr22:39261635-39261636(-) m6A 3'UTR       24284625//24981863//22575960 chr22:39261951-39261952(-) m6A 3'UTR       24284625 chr22:39262382-39262383(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr22:39262557-39262558(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr22:39262835-39262836(-) m6A CDS       24284625//24209618//24981863//27371828//27773536//22575960//22608085 chr22:39262922-39262923(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085 chr22:39262937-39262938(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085 chr22:39263017-39263018(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr22:39263039-39263040(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr22:39263087-39263088(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085 chr22:39265582-39265583(-) m6A exon//intron       24284625//24209618//27371828//27773536 chr22:39265636-39265637(-) m6A exon//intron       24209618//27371828//27773536 chr22:39266820-39266821(-) m6A exon//intron       - chr22:39267406-39267407(-) m6A exon//intron       27773536 chr22:39267498-39267499(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr22:39267505-39267506(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr22:39267511-39267512(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr22:39267523-39267524(-) Y CDS//exon       26075521 chr22:39267701-39267702(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr22:39267726-39267727(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr22:39267735-39267736(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CBX6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: CBX6

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg