Detail Information

Basic Information:


  VIRBase ID:  

VHID00079180

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2494

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:           SLC9A1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H2-3p SLC9A1
miRBase
Accession/Entrez ID		 MIMAT0008399 6548
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - APNH//LIKNS//NHE-1//NHE1//PPP1R143

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC9A1
chr1:27471298(-) A-I      intronic
chr1:27446754(-) A-I      intronic
chr1:27442069(-) A-I      intronic
chr1:27435108(-) A-I      intronic
chr1:27434791(-) A-I      intronic
chr1:27434762(-) A-I      intronic
chr1:27434760(-) A-I      intronic
chr1:27435003(-) A-I      intronic
chr1:27457996(-) A-I      intronic
chr1:27457993(-) A-I      intronic
chr1:27458117(-) A-I      intronic
chr1:27460496(-) A-I      intronic
chr1:27461344(-) A-I      intronic
chr1:27461416(-) A-I      intronic
chr1:27461422(-) A-I      intronic
chr1:27461455(-) A-I      intronic
chr1:27461474(-) A-I      intronic
chr1:27471357(-) A-I      intronic
chr1:27471477(-) A-I      intronic
chr1:27473423(-) A-I      intronic
chr1:27457984(-) A-I      intronic
chr1:27456808(-) A-I      intronic
chr1:27447166(-) A-I      intronic
chr1:27446790(-) A-I      intronic
chr1:27458393(-) A-I      intronic
chr1:27471488(-) A-I      intronic
chr1:27473382(-) A-I      intronic
chr1:27473383(-) A-I      intronic
chr1:27446785(-) A-I      intronic
chr1:27471478(-) A-I      intronic
chr1:27458153(-) A-I      intronic
chr1:27434672(-) A-I      intronic
chr1:27458127(-) A-I      intronic
chr1:27448491(-) A-I      intronic
chr1:27446985(-) A-I      intronic
chr1:27435068(-) A-I      intronic
chr1:27458076(-) A-I      intronic
chr1:27450069(-) A-I      intronic
chr1:27448604(-) A-I      intronic
chr1:27457839(-) A-I      intronic
chr1:27456788(-) A-I      intronic
chr1:27452354(-) A-I      intronic
chr1:27434925(-) A-I      intronic
chr1:27435113(-) A-I      intronic
chr1:27435164(-) A-I      intronic
chr1:27434924(-) A-I      intronic
chr1:27454942(-) A-I      intronic
chr1:27448521(-) A-I      intronic
chr1:27446683(-) A-I      intronic
chr1:27446777(-) A-I      intronic
chr1:27434912(-) A-I      intronic
chr1:27435116(-) A-I      intronic
chr1:27471334(-) A-I      intronic
chr1:27435486(-) A-I      intronic
chr1:27446984(-) A-I      intronic
chr1:27434984(-) A-I      intronic
chr1:27434625(-) A-I      intronic
chr1:27458381(-) A-I      intronic
chr1:27454955(-) A-I      intronic
chr1:27460527(-) A-I      intronic
chr1:27453602(-) A-I      intronic
chr1:27471401(-) A-I      intronic
chr1:27471243(-) A-I      intronic
chr1:27461656(-) A-I      intronic
chr1:27448592(-) A-I      intronic
chr1:27434976(-) A-I      intronic
chr1:27461407(-) A-I      intronic
chr1:27457840(-) A-I      intronic
chr1:27450455(-) A-I      intronic
chr1:27453620(-) A-I      intronic
chr1:27460384(-) A-I      intronic
chr1:27461655(-) A-I      intronic
chr1:27434977(-) A-I      intronic
chr1:27458157(-) A-I      intronic
chr1:27465101(-) A-I      intronic
chr1:27458329(-) A-I      intronic
chr1:27447129(-) A-I      intronic
chr1:27460540(-) A-I      intronic
chr1:27458326(-) A-I      intronic
chr1:27435057(-) A-I      intronic
chr1:27435126(-) A-I      intronic
chr1:27446781(-) A-I      intronic
chr1:27446770(-) A-I      intronic
chr1:27446733(-) A-I      intronic
chr1:27446799(-) A-I      intronic
chr1:27458186(-) A-I      intronic
chr1:27458067(-) A-I      intronic
chr1:27456794(-) A-I      intronic
chr1:27453688(-) A-I      intronic
chr1:27471371(-) A-I      intronic
chr1:27456624(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC9A1
chr1:27435126(-) A-G intron -    22484847
chr1:27435164(-) A-G intron -    22484847
chr1:27446733(-) A-G intron -    22484847
chr1:27446770(-) A-G intron -    22484847
chr1:27446777(-) A-G intron -    22484847
chr1:27446781(-) A-G intron -    22484847
chr1:27446799(-) A-G intron -    22484847
chr1:27446984(-) A-G intron -    22484847
chr1:27446985(-) A-G intron -    22484847
chr1:27447129(-) A-G intron -    22484847
chr1:27453681(-) T-C intron -    22484847
chr1:27456624(-) A-G intron -    22484847
chr1:27458067(-) A-G intron -    22484847
chr1:27458153(-) A-G intron -    22484847
chr1:27458157(-) A-G intron -    22484847
chr1:27458186(-) A-G intron -    22484847
chr1:27458326(-) A-G intron -    22484847
chr1:27460527(-) A-G intron -    22484847
chr1:27460540(-) A-G intron -    22484847
chr1:27461407(-) A-G intron -    22484847
chr1:27471371(-) A-G intron -    22484847
chr1:27471401(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC9A1
chr1:27425329-27425330(-) Y 3'UTR//exon       26075521
chr1:27425346-27425347(-) m6A 3'UTR//exon       27773535
chr1:27425491-27425492(-) m6A 3'UTR//exon       27773535
chr1:27425712-27425713(-) m6A 3'UTR//exon       27773535
chr1:27425862-27425863(-) m6A 3'UTR//exon       24981863//27773535
chr1:27425983-27425984(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr1:27425995-27425996(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr1:27426006-27426007(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr1:27426102-27426103(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828
chr1:27426139-27426140(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr1:27426156-27426157(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr1:27426513-27426514(-) m6A 3'UTR//exon       25456834//27371828
chr1:27426519-27426520(-) m6A 3'UTR//exon       25456834//27371828
chr1:27426575-27426576(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828
chr1:27426760-27426761(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536
chr1:27426821-27426822(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536
chr1:27426925-27426926(-) m6A CDS//exon       24284625//24209618//25456834//27371828
chr1:27426940-27426941(-) m6A CDS//exon       24284625//24209618//25456834//27371828
chr1:27427053-27427054(-) m6A CDS//exon       27371828
chr1:27427728-27427729(-) m6A CDS//exon       24284625
chr1:27428261-27428262(-) m6A CDS//exon       24284625//27371828
chr1:27428282-27428283(-) m6A CDS//exon       27371828
chr1:27428299-27428300(-) m6A CDS//exon       27371828
chr1:27428517-27428518(-) m6A CDS//exon       27371828
chr1:27428531-27428532(-) m6A CDS//exon       27371828
chr1:27428564-27428565(-) m6A CDS//exon       27773535//27371828
chr1:27428618-27428619(-) m6A CDS//exon       24981863//27773535//27371828
chr1:27429777-27429778(-) m6A CDS//exon       27773535
chr1:27429834-27429835(-) m6A exon//intron       27773535
chr1:27432117-27432118(-) m6A 3'UTR//intron       -
chr1:27432145-27432146(-) m6A 3'UTR//intron       -
chr1:27480925-27480926(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535
chr1:27480938-27480939(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535
chr1:27480944-27480945(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535
chr1:27480998-27480999(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535
chr1:27481071-27481072(-) m6A 5'UTR//intron       24284625//24209618//27773535
chr1:27481293-27481294(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr1:27481388-27481389(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828
chr1:27481871-27481872(-) m6A 5'UTR       25456834//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC9A1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H2-3p
Interactor2: SLC9A1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...