Basic Information:

  VIRBase ID:  

VHID00078243

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-3p:  MIMAT0008399          CDK8:  NM_001318368     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-3p	CDK8
miRBase Accession/Entrez ID	MIMAT0008399	1024
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	IDDHBA//K35

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDK8	chr13:26976368(+) A-I      intronic chr13:26963477(+) A-I      intronic chr13:26963480(+) A-I      intronic chr13:26972861(+) A-I      intronic chr13:26973240(+) A-I      intronic chr13:26973246(+) A-I      intronic chr13:26973264(+) A-I      intronic chr13:26973344(+) A-I      intronic chr13:26933896(+) A-I      intronic chr13:26972972(+) A-I      intronic chr13:26973347(+) A-I      intronic chr13:26943480(+) A-I      intronic chr13:26973356(+) A-I      intronic chr13:26973394(+) A-I      intronic chr13:26977446(+) A-I      intronic chr13:26933914(+) A-I      intronic chr13:26972980(+) A-I      intronic chr13:26933946(+) A-I      intronic chr13:26933953(+) A-I      intronic chr13:26948064(+) A-I      intronic chr13:26933978(+) A-I      intronic chr13:26933992(+) A-I      intronic chr13:26869026(+) A-I      intronic chr13:26934019(+) A-I      intronic chr13:26943490(+) A-I      intronic chr13:26934062(+) A-I      intronic chr13:26868372(+) A-I      intronic chr13:26934100(+) A-I      intronic chr13:26934338(+) A-I      intronic chr13:26973257(+) A-I      intronic chr13:26934361(+) A-I      intronic chr13:26934378(+) A-I      intronic chr13:26867662(+) A-I      intronic chr13:26945809(+) A-I      intronic chr13:26963374(+) A-I      intronic chr13:26934390(+) A-I      intronic chr13:26937203(+) A-I      intronic chr13:26937248(+) A-I      intronic chr13:26842592(+) A-I      intronic chr13:26937250(+) A-I      intronic chr13:26959816(+) A-I      intronic chr13:26937286(+) A-I      intronic chr13:26943746(+) A-I      intronic chr13:26945882(+) A-I      intronic chr13:26945955(+) A-I      intronic chr13:26948102(+) A-I      intronic chr13:26963380(+) A-I      intronic chr13:26948107(+) A-I      intronic chr13:26948131(+) A-I      intronic chr13:26948293(+) A-I      intronic chr13:26948303(+) A-I      intronic chr13:26963486(+) A-I      intronic chr13:26954334(+) A-I      intronic chr13:26954410(+) A-I      intronic chr13:26954491(+) A-I      intronic chr13:26954501(+) A-I      intronic chr13:26959601(+) A-I      intronic chr13:26959689(+) A-I      intronic chr13:26959714(+) A-I      intronic chr13:26842557(+) A-I      intronic chr13:26844420(+) A-I      intronic chr13:26865135(+) A-I      intronic chr13:26969570(+) A-I      intronic chr13:26868961(+) A-I      intronic chr13:26842570(+) A-I      intronic chr13:26842580(+) A-I      intronic chr13:26907451(+) A-I      intronic chr13:26842688(+) A-I      intronic chr13:26844272(+) A-I      intronic chr13:26844336(+) A-I      intronic chr13:26954386(+) A-I      intronic chr13:26959806(+) A-I      intronic chr13:26844337(+) A-I      intronic chr13:26973286(+) A-I      intronic chr13:26844341(+) A-I      intronic chr13:26844343(+) A-I      intronic chr13:26844451(+) A-I      intronic chr13:26850032(+) A-I      intronic chr13:26850093(+) A-I      intronic chr13:26945894(+) A-I      intronic chr13:26862199(+) A-I      intronic chr13:26862200(+) A-I      intronic chr13:26934411(+) A-I      intronic chr13:26863375(+) A-I      intronic chr13:26865181(+) A-I      intronic chr13:26867506(+) A-I      intronic chr13:26977468(+) A-I      intronic chr13:26867648(+) A-I      intronic chr13:26867674(+) A-I      intronic chr13:26972941(+) A-I      intronic chr13:26877481(+) A-I      intronic chr13:26933884(+) A-I      intronic chr13:26877499(+) A-I      intronic chr13:26877542(+) A-I      intronic chr13:26878322(+) A-I      intronic chr13:26878333(+) A-I      intronic chr13:26878346(+) A-I      intronic chr13:26868368(+) A-I      intronic chr13:26959849(+) A-I      intronic chr13:26879073(+) A-I      intronic chr13:26901872(+) A-I      intronic chr13:26901887(+) A-I      intronic chr13:26906537(+) A-I      intronic chr13:26906542(+) A-I      intronic chr13:26907320(+) A-I      intronic chr13:26907356(+) A-I      intronic chr13:26907357(+) A-I      intronic chr13:26907377(+) A-I      intronic chr13:26907406(+) A-I      intronic chr13:26918752(+) A-I      intronic chr13:26918757(+) A-I      intronic chr13:26919567(+) A-I      intronic chr13:26919684(+) A-I      intronic chr13:26919700(+) A-I      intronic chr13:26919717(+) A-I      intronic chr13:26919729(+) A-I      intronic chr13:26924516(+) A-I      intronic chr13:26924523(+) A-I      intronic chr13:26924844(+) A-I      intronic chr13:26929498(+) A-I      intronic chr13:26929575(+) A-I      intronic chr13:26943531(+) A-I      intronic chr13:26959708(+) A-I      intronic chr13:26943322(+) A-I      intronic chr13:26943489(+) A-I      intronic chr13:26972945(+) A-I      intronic chr13:26934364(+) A-I      intronic chr13:26880835(+) A-I      intronic chr13:26959617(+) A-I      intronic chr13:26963339(+) A-I      intronic chr13:26876265(+) A-I      intronic chr13:26934053(+) A-I      intronic chr13:26876222(+) A-I      intronic chr13:26945892(+) A-I      intronic chr13:26907333(+) A-I      intronic chr13:26919588(+) A-I      intronic chr13:26959753(+) A-I      intronic chr13:26934042(+) A-I      intronic chr13:26948217(+) A-I      intronic chr13:26842644(+) A-I      intronic chr13:26972894(+) A-I      intronic chr13:26954373(+) A-I      intronic chr13:26948223(+) A-I      intronic chr13:26904618(+) A-I      intronic chr13:26948063(+) A-I      intronic chr13:26972931(+) A-I      intronic chr13:26945853(+) A-I      intronic chr13:26842477(+) A-I      intronic chr13:26943375(+) A-I      intronic chr13:26943546(+) A-I      intronic chr13:26934036(+) A-I      intronic chr13:26963458(+) A-I      intronic chr13:26943536(+) A-I      intronic chr13:26943313(+) A-I      intronic chr13:26845800(+) A-I      intronic chr13:26943314(+) A-I      intronic chr13:26954446(+) A-I      intronic chr13:26973247(+) A-I      intronic chr13:26933970(+) A-I      intronic chr13:26844317(+) A-I      intronic chr13:26845904(+) A-I      intronic chr13:26954592(+) A-I      intronic chr13:26865109(+) A-I      intronic chr13:26943444(+) A-I      intronic chr13:26865076(+) A-I      intronic chr13:26946029(+) A-I      intronic chr13:26845898(+) A-I      intronic chr13:26954714(+) A-I      intronic chr13:26878281(+) A-I      intronic chr13:26933909(+) A-I      intronic chr13:26943380(+) A-I      intronic chr13:26867621(+) A-I      intronic chr13:26943795(+) A-I      intronic chr13:26959691(+) A-I      intronic chr13:26934351(+) A-I      intronic chr13:26954532(+) A-I      intronic chr13:26878183(+) A-I      intronic chr13:26844379(+) A-I      intronic chr13:26945817(+) A-I      intronic chr13:26842705(+) A-I      intronic chr13:26946007(+) A-I      intronic chr13:26878124(+) A-I      intronic chr13:26924831(+) A-I      intronic chr13:26901812(+) A-I      intronic chr13:26907460(+) A-I      intronic chr13:26933982(+) A-I      intronic chr13:26972842(+) A-I      intronic chr13:26842579(+) A-I      intronic chr13:26937689(+) A-I      intronic chr13:26879010(+) A-I      intronic chr13:26844370(+) A-I      intronic chr13:26963436(+) A-I      intronic chr13:26954498(+) A-I      intronic chr13:26929497(+) A-I      intronic chr13:26943521(+) A-I      intronic chr13:26954456(+) A-I      intronic chr13:26918641(+) A-I      intronic chr13:26907457(+) A-I      intronic chr13:26943765(+) A-I      intronic chr13:26959713(+) A-I      intronic chr13:26943381(+) A-I      intronic chr13:26973409(+) A-I      intronic chr13:26972950(+) A-I      intronic chr13:26878282(+) A-I      intronic chr13:26963438(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CDK8	chr13:26933017(+) A-I intron -    21960545 chr13:26934390(+) A-I intron -    21960545 chr13:26891271(+) C-T intron -    22484847 chr13:26948217(+) A-G intron -    22484847 chr13:26948223(+) A-G intron -    22484847 chr13:26948312(+) T-A intron -    22484847 chr13:26963436(+) A-G intron -    22484847 chr13:26963438(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDK8	chr13:26828483-26828484(+) m6A 5'UTR       24209618//27773536 chr13:26828495-26828496(+) m6A 5'UTR       24209618//27773536 chr13:26828782-26828783(+) m6A CDS       24284625//24981863 chr13:26828830-26828831(+) m6A CDS       24284625//24981863 chr13:26911717-26911718(+) m6A CDS       - chr13:26978158-26978159(+) Y 3'UTR//CDS//exon       26075521 chr13:26979247-26979248(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDK8	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-3p
Interactor2: CDK8

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg