Basic Information:

  VIRBase ID:  

VHID00077960

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          STAC3:  NR_104422     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	STAC3
miRBase Accession/Entrez ID	MIMAT0008398	246329
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MYPBB//NAM

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	STAC3	chr12:57643728(-) A-I      intronic chr12:57643733(-) A-I      intronic chr12:57643729(-) A-I      intronic chr12:57643732(-) A-I      intronic chr12:57639286(-) A-I      intronic chr12:57644018(-) A-I      intronic chr12:57644025(-) A-I      intronic chr12:57644091(-) A-I      intronic chr12:57639265(-) A-I      intronic chr12:57639278(-) A-I      intronic chr12:57639292(-) A-I      intronic chr12:57639337(-) A-I      intronic chr12:57643601(-) A-I      intronic chr12:57644010(-) A-I      intronic chr12:57644129(-) A-I      intronic chr12:57643561(-) A-I      intronic chr12:57640296(-) A-I      intronic chr12:57639829(-) A-I      intronic chr12:57643694(-) A-I      intronic chr12:57643771(-) A-I      intronic chr12:57639628(-) A-I      intronic chr12:57639828(-) A-I      intronic chr12:57643910(-) A-I      intronic chr12:57639231(-) A-I      intronic chr12:57643916(-) A-I      intronic chr12:57643928(-) A-I      intronic chr12:57639382(-) A-I      intronic chr12:57644166(-) A-I      intronic chr12:57639442(-) A-I      intronic chr12:57644090(-) A-I      intronic chr12:57643792(-) A-I      intronic chr12:57643778(-) A-I      intronic chr12:57639425(-) A-I      intronic chr12:57639688(-) A-I      intronic chr12:57642300(-) A-I      intronic chr12:57643663(-) A-I      intronic chr12:57639780(-) A-I      intronic chr12:57643650(-) A-I      intronic chr12:57643741(-) A-I      intronic chr12:57639783(-) A-I      intronic chr12:57643795(-) A-I      intronic chr12:57640265(-) A-I      intronic chr12:57644051(-) A-I      intronic chr12:57643690(-) A-I      intronic chr12:57639648(-) A-I      intronic chr12:57644165(-) A-I      intronic chr12:57640441(-) A-I      intronic chr12:57640267(-) A-I      intronic chr12:57639223(-) A-I      intronic chr12:57644110(-) A-I      intronic chr12:57643636(-) A-I      intronic chr12:57640287(-) A-I      intronic chr12:57640564(-) A-I      intronic chr12:57643938(-) A-I      intronic chr12:57644014(-) A-I      intronic chr12:57639636(-) A-I      intronic chr12:57644126(-) A-I      intronic chr12:57639633(-) A-I      intronic chr12:57643711(-) A-I      intronic chr12:57643976(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	STAC3	chr12:57643741(-) A-I intron -    22327324 chr12:57639223(-) A-G intron -    22484847 chr12:57639728(-) T-C intron -    22484847 chr12:57643741(-) A-G intron -    22484847 chr12:57639442(-) A-G intron -    22484847 chr12:57639824(-) T-C intron -    22484847 chr12:57643636(-) A-G intron -    22484847 chr12:57643663(-) A-G intron -    22484847 chr12:57643764(-) T-C intron -    22484847 chr12:57644090(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	STAC3	chr12:57637282-57637283(-) m6A 3'UTR       - chr12:57637315-57637316(-) m6A 3'UTR       27371828 chr12:57637377-57637378(-) m6A 3'UTR       25456834//27371828 chr12:57637384-57637385(-) m6A 3'UTR       25456834//27371828 chr12:57637446-57637447(-) m6A 3'UTR       25456834//27371828 chr12:57637506-57637507(-) m6A 3'UTR       25456834//27371828 chr12:57637568-57637569(-) m6A 3'UTR       27773535 chr12:57637874-57637875(-) m6A 3'UTR//CDS       - chr12:57637907-57637908(-) m6A 3'UTR//CDS       - chr12:57637970-57637971(-) m6A CDS       - chr12:57638671-57638672(-) m6A exon//intron       27773535 chr12:57638712-57638713(-) m6A CDS//exon       - chr12:57638744-57638745(-) m6A CDS//exon       - chr12:57638937-57638938(-) m6A CDS//exon//intron       - chr12:57638952-57638953(-) m6A CDS//exon//intron       - chr12:57640604-57640605(-) m6A CDS//exon       - chr12:57640623-57640624(-) m6A CDS//exon       - chr12:57640651-57640652(-) m6A 5'UTR//CDS//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	STAC3	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: STAC3

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg