Basic Information:

  VIRBase ID:  

VHID00077915

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          TMEM139:  NR_104254     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	TMEM139
miRBase Accession/Entrez ID	MIMAT0008398	135932
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM139	chr7:142979963(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM139	chr7:142983263-142983264(+) m6A CDS//intron       27371828 chr7:142983518-142983519(+) m6A CDS//exon       24284625//27371828 chr7:142983564-142983565(+) m6A CDS//exon       24284625//24981863 chr7:142983596-142983597(+) m6A CDS//exon       24284625//24981863 chr7:142983648-142983649(+) m6A CDS//exon       24284625 chr7:142983684-142983685(+) m6A CDS//exon       24284625 chr7:142983690-142983691(+) m6A CDS//exon       24284625 chr7:142983771-142983772(+) m6A CDS//exon       24284625//24981863//22575960 chr7:142983902-142983903(+) m6A CDS//exon       24284625//24981863//22575960 chr7:142983958-142983959(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:142984006-142984007(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:142984024-142984025(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:142984039-142984040(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:142984045-142984046(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr7:142984266-142984267(+) m6A 3'UTR//exon       24284625 chr7:142984388-142984389(+) m6A 3'UTR//exon       24284625//24981863 chr7:142984474-142984475(+) m6A 3'UTR//exon       24284625 chr7:142984498-142984499(+) m6A 3'UTR//exon       24284625 chr7:142984509-142984510(+) m6A 3'UTR//exon       24284625 chr7:142984702-142984703(+) m6A 3'UTR//exon       24284625//22608085 chr7:142984732-142984733(+) m6A 3'UTR//exon       24284625//22608085 chr7:142984779-142984780(+) m6A 3'UTR//exon       24284625//22608085 chr7:142984787-142984788(+) m6A 3'UTR//exon       24284625 chr7:142984803-142984804(+) m6A 3'UTR//exon       24284625 chr7:142985007-142985008(+) m6A 3'UTR//exon       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM139	Exosome Blood     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: TMEM139

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg