Basic Information:

  VIRBase ID:  

VHID00077881

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          SMIM12:  NM_001320261     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	SMIM12
miRBase Accession/Entrez ID	MIMAT0008398	113444
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf212

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMIM12	chr1:35322638(-) A-I      intronic chr1:35321796(-) A-I      intronic chr1:35321870(-) A-I      intronic chr1:35319501(-) A-I      3'UTR chr1:35322560(-) A-I      intronic chr1:35322274(-) A-I      5'UTR chr1:35320164(-) A-I      3'UTR chr1:35321792(-) A-I      intronic chr1:35322657(-) A-I      intronic chr1:35319976(-) A-I      3'UTR chr1:35319741(-) A-I      3'UTR chr1:35321942(-) A-I      intronic chr1:35321825(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SMIM12	chr1:35319135-35319136(-) m6A 3'UTR//intron       27773535 chr1:35319219-35319220(-) m6A 3'UTR//intron       27773535 chr1:35319238-35319239(-) m6A 3'UTR//intron       27773535 chr1:35320421-35320422(-) m6A 3'UTR//intron       27773535 chr1:35320477-35320478(-) m6A 3'UTR//intron       27773535 chr1:35320502-35320503(-) m6A 3'UTR//intron       27773535 chr1:35320529-35320530(-) m6A 3'UTR//intron       27773535 chr1:35320650-35320651(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:35320674-35320675(-) m6A 3'UTR//intron       24981863//27773535//22608085 chr1:35320714-35320715(-) m6A 3'UTR//intron       25456834//24981863//27773535//22608085 chr1:35320741-35320742(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr1:35320766-35320767(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085 chr1:35321018-35321019(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr1:35321135-35321136(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr1:35321225-35321226(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr1:35321292-35321293(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:35321318-35321319(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:35321324-35321325(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:35321357-35321358(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr1:35321384-35321385(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr1:35321462-35321463(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:35321559-35321560(-) m6A CDS       24284625//24209618//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SMIM12	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: SMIM12

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg