Basic Information:

  VIRBase ID:  

VHID00077873

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          TPGS1:  NM_033513     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	TPGS1
miRBase Accession/Entrez ID	MIMAT0008398	91978
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf20//GTRGEO22//PGs1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TPGS1	chr19:515577(+) A-I      intronic chr19:515578(+) A-I      intronic chr19:515466(+) A-I      intronic chr19:515482(+) A-I      intronic chr19:515491(+) A-I      intronic chr19:515499(+) A-I      intronic chr19:515526(+) A-I      intronic chr19:512132(+) A-I      intronic chr19:512133(+) A-I      intronic chr19:516489(+) A-I      intronic chr19:516565(+) A-I      intronic chr19:512114(+) A-I      intronic chr19:512363(+) A-I      intronic chr19:515476(+) A-I      intronic chr19:515631(+) A-I      intronic chr19:515618(+) A-I      intronic chr19:515483(+) A-I      intronic chr19:515562(+) A-I      intronic chr19:511893(+) A-I      intronic chr19:512300(+) A-I      intronic chr19:515281(+) A-I      intronic chr19:515591(+) A-I      intronic chr19:516568(+) A-I      intronic chr19:516644(+) A-I      intronic chr19:516478(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TPGS1	chr19:507561-507562(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr19:507615-507616(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr19:507723-507724(+) m6A CDS//exon       24284625//24981863 chr19:507884-507885(+) m6A exon//intron       24284625 chr19:508522-508523(+) m6A exon//intron       - chr19:508646-508647(+) m6A exon//intron       - chr19:509069-509070(+) m6A exon//intron       - chr19:509113-509114(+) m6A exon//intron       24284625//25456834//22608085 chr19:509120-509121(+) m6A exon//intron       24284625//25456834//22608085 chr19:509125-509126(+) m6A exon//intron       24284625//25456834//22608085 chr19:509171-509172(+) m6A exon//intron       24284625//25456834//24981863//22608085 chr19:509228-509229(+) m6A exon//intron       24284625//25456834//22608085 chr19:509270-509271(+) m6A exon//intron       22608085 chr19:509516-509517(+) m6A exon//intron       25456834 chr19:509675-509676(+) m6A exon//intron       25456834 chr19:509804-509805(+) m6A exon//intron       24284625//25456834//22575960//22608085 chr19:509846-509847(+) m6A exon//intron       24284625//25456834//22575960//22608085 chr19:509913-509914(+) m6A exon//intron       24284625//25456834//22575960//22608085 chr19:509938-509939(+) m6A exon//intron       25456834//22575960//22608085 chr19:509950-509951(+) m6A exon//intron       25456834//22575960//22608085 chr19:510362-510363(+) m6A exon//intron       - chr19:519169-519170(+) m6A CDS       24209618//25456834//24981863//22575960//22608085 chr19:519217-519218(+) m6A CDS       24209618//25456834//24981863//22575960//22608085 chr19:519319-519320(+) m6A CDS       24209618//24981863//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TPGS1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: TPGS1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg