Basic Information:

  VIRBase ID:  

VHID00077706

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          SEMA4C:  NM_017789     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	SEMA4C
miRBase Accession/Entrez ID	MIMAT0008398	54910
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	M-SEMA-F//SEMACL1//SEMAF//SEMAI

RNA Editing:

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SEMA4C	chr2:97528456(-) T-C intron -    22484847 chr2:97525583(-) C-T exon 3'UTR    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEMA4C	chr2:97525604-97525605(-) m6A 3'UTR//exon       24981863//27773535 chr2:97525850-97525851(-) m6A 3'UTR//exon       24209618 chr2:97526103-97526104(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr2:97526118-97526119(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr2:97526127-97526128(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr2:97526221-97526222(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526255-97526256(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526284-97526285(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526356-97526357(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526416-97526417(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526428-97526429(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526471-97526472(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr2:97526516-97526517(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr2:97526677-97526678(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr2:97526689-97526690(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr2:97526754-97526755(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//27773536 chr2:97526882-97526883(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536 chr2:97527070-97527071(-) m6A CDS//exon       25456834 chr2:97527083-97527084(-) m6A CDS//exon       25456834 chr2:97527099-97527100(-) m6A CDS//exon       25456834 chr2:97527149-97527150(-) m6A CDS//exon       - chr2:97527173-97527174(-) m6A CDS//exon       - chr2:97530014-97530015(-) m6A CDS//exon       - chr2:97533529-97533530(-) m6A CDS       24209618 chr2:97533546-97533547(-) m6A CDS       24209618 chr2:97533658-97533659(-) m6A 5'UTR       24284625//24209618 chr2:97534178-97534179(-) m6A 5'UTR//intron       24284625//24209618 chr2:97534184-97534185(-) m6A 5'UTR//intron       24284625//24209618 chr2:97534194-97534195(-) m6A 5'UTR//intron       24284625//24209618 chr2:97535631-97535632(-) m6A 5'UTR//intron       24209618//24981863//27773536 chr2:97536131-97536132(-) m6A 5'UTR       25456834//27773536 chr2:97536281-97536282(-) m6A 5'UTR       25456834 chr2:97536333-97536334(-) m6A 5'UTR       25456834 chr2:97536347-97536348(-) m6A 5'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEMA4C	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: SEMA4C

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg