Basic Information:

  VIRBase ID:  

VHID00077583

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          SEMA6B:  NM_032108     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	SEMA6B
miRBase Accession/Entrez ID	MIMAT0008398	10501
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EPM11//SEM-SEMA-Y//SEMA-VIB//SEMAN//semaZ

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SEMA6B	chr19:4544826(-) A-I      intronic chr19:4544860(-) A-I      intronic chr19:4544865(-) A-I      intronic chr19:4551294(-) A-I      intronic chr19:4551719(-) A-I      intronic chr19:4551676(-) A-I      intronic chr19:4545496(-) A-I      intronic chr19:4545174(-) A-I      intronic chr19:4559067(-) A-I      intronic chr19:4551828(-) A-I      intronic chr19:4551815(-) A-I      intronic chr19:4551729(-) A-I      intronic chr19:4544840(-) A-I      intronic chr19:4558961(-) A-I      intronic chr19:4551504(-) A-I      intronic chr19:4545488(-) A-I      intronic chr19:4544825(-) A-I      intronic chr19:4544715(-) A-I      intronic chr19:4558960(-) A-I      intronic chr19:4544827(-) A-I      intronic chr19:4544776(-) A-I      intronic chr19:4544850(-) A-I      intronic chr19:4559018(-) A-I      intronic chr19:4544812(-) A-I      intronic chr19:4559034(-) A-I      intronic chr19:4546801(-) A-I      intronic chr19:4545245(-) A-I      intronic chr19:4558949(-) A-I      intronic chr19:4545231(-) A-I      intronic chr19:4551370(-) A-I      intronic chr19:4551587(-) A-I      intronic chr19:4558963(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SEMA6B	chr19:4542619-4542620(-) m6A 3'UTR       27773535//27371828//27773536 chr19:4542869-4542870(-) m6A 3'UTR       - chr19:4542894-4542895(-) m6A 3'UTR       - chr19:4542924-4542925(-) m6A 3'UTR       - chr19:4543216-4543217(-) m6A 3'UTR//intron       - chr19:4543382-4543383(-) m6A 3'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543570-4543571(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543632-4543633(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543637-4543638(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543670-4543671(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543706-4543707(-) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536//22608085 chr19:4543853-4543854(-) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536 chr19:4543892-4543893(-) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536 chr19:4544072-4544073(-) m6A CDS//intron       24209618//25456834//27371828//27773536 chr19:4544171-4544172(-) m6A CDS//intron       24209618//25456834//24981863//27371828//27773536 chr19:4544375-4544376(-) m6A CDS//intron       24209618//25456834//27371828//27773536 chr19:4544489-4544490(-) m6A CDS       24209618 chr19:4544513-4544514(-) m6A CDS       24209618 chr19:4545810-4545811(-) m6A exon//intron       24209618 chr19:4556087-4556088(-) m6A CDS       24284625//27773535 chr19:4556968-4556969(-) m6A CDS       24284625//27773535 chr19:4557232-4557233(-) m6A CDS       24284625//27773535 chr19:4558040-4558041(-) m6A CDS       24284625//27773535 chr19:4559556-4559557(-) m6A 5'UTR       24209618 chr19:4559562-4559563(-) m6A 5'UTR       24209618 chr19:4559584-4559585(-) m6A 5'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SEMA6B	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: SEMA6B

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg