Basic Information:

  VIRBase ID:  

VHID00077548

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          RIMS3:  NM_014747     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	RIMS3
miRBase Accession/Entrez ID	MIMAT0008398	9783
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NIM3//RIM 3//RIM3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RIMS3	chr1:41108941(-) A-I      intronic chr1:41108377(-) A-I      intronic chr1:41112590(-) A-I      intronic chr1:41097815(-) A-I      intronic chr1:41123252(-) A-I      intronic chr1:41097446(-) A-I      intronic chr1:41097568(-) A-I      intronic chr1:41097561(-) A-I      intronic chr1:41097829(-) A-I      intronic chr1:41129526(-) A-I      intronic chr1:41108968(-) A-I      intronic chr1:41097535(-) A-I      intronic chr1:41108942(-) A-I      intronic chr1:41097764(-) A-I      intronic chr1:41097739(-) A-I      intronic chr1:41108932(-) A-I      intronic chr1:41123197(-) A-I      intronic chr1:41123246(-) A-I      intronic chr1:41097783(-) A-I      intronic chr1:41108888(-) A-I      intronic chr1:41108978(-) A-I      intronic chr1:41108889(-) A-I      intronic chr1:41109100(-) A-I      intronic chr1:41109018(-) A-I      intronic chr1:41089410(-) A-I      3'UTR chr1:41108936(-) A-I      intronic chr1:41109080(-) A-I      intronic chr1:41108964(-) A-I      intronic chr1:41108834(-) A-I      intronic chr1:41129525(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RIMS3	chr1:41089410(-) A-I exon 3'UTR    19478186 chr1:41108834(-) A-I intron -    15545495 chr1:41108888(-) A-I intron -    15545495 chr1:41108889(-) A-I intron -    15545495 chr1:41108932(-) A-I intron -    15545495 chr1:41108936(-) A-I intron -    15545495 chr1:41108941(-) A-I intron -    15545495 chr1:41108942(-) A-I intron -    15545495 chr1:41108964(-) A-I intron -    15545495 chr1:41108968(-) A-I intron -    15545495 chr1:41108978(-) A-I intron -    15545495 chr1:41109018(-) A-I intron -    15545495 chr1:41109080(-) A-I intron -    15545495 chr1:41109100(-) A-I intron -    15545495

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RIMS3	chr1:41088350-41088351(-) Y 3'UTR       26075521 chr1:41088495-41088496(-) Y 3'UTR       26075521 chr1:41092264-41092265(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chr1:41092290-41092291(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085 chr1:41092321-41092322(-) m6A CDS       24284625//25456834//24981863//27371828//27773536 chr1:41092369-41092370(-) m6A CDS       25456834//24981863//27371828//27773536 chr1:41092384-41092385(-) m6A CDS       25456834//24981863//27371828//27773536 chr1:41094502-41094503(-) m6A CDS       25456834 chr1:41101681-41101682(-) m6A CDS       24209618//27371828//27773536 chr1:41107482-41107483(-) m6A CDS       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RIMS3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: RIMS3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg