Detail Information

Basic Information:


  VIRBase ID:  

VHID00077481

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:           XPA:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv1-miR-H2-5p XPA
miRBase
Accession/Entrez ID		 MIMAT0008398 7507
Organism Human alphaherpesvirus 1 (HSV-1) Homo sapiens
Category miRNA mRNA
Alias - XP1//XPAC

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR XPA
chr9:100454102(-) A-I      intronic
chr9:100453017(-) A-I      intronic
chr9:100453032(-) A-I      intronic
chr9:100453042(-) A-I      intronic
chr9:100453086(-) A-I      intronic
chr9:100453727(-) A-I      intronic
chr9:100453754(-) A-I      intronic
chr9:100454103(-) A-I      intronic
chr9:100453915(-) A-I      intronic
chr9:100454082(-) A-I      intronic
chr9:100442659(-) A-I      intronic
chr9:100442660(-) A-I      intronic
chr9:100442673(-) A-I      intronic
chr9:100452657(-) A-I      intronic
chr9:100452662(-) A-I      intronic
chr9:100452683(-) A-I      intronic
chr9:100452692(-) A-I      intronic
chr9:100452707(-) A-I      intronic
chr9:100453006(-) A-I      intronic
chr9:100453008(-) A-I      intronic
chr9:100453029(-) A-I      intronic
chr9:100454353(-) A-I      intronic
chr9:100454108(-) A-I      intronic
chr9:100452576(-) A-I      intronic
chr9:100452589(-) A-I      intronic
chr9:100452608(-) A-I      intronic
chr9:100452637(-) A-I      intronic
chr9:100452753(-) A-I      intronic
chr9:100452781(-) A-I      intronic
chr9:100452858(-) A-I      intronic
chr9:100452863(-) A-I      intronic
chr9:100452935(-) A-I      intronic
chr9:100454473(-) A-I      intronic
chr9:100439711(-) A-I      intronic
chr9:100439870(-) A-I      intronic
chr9:100452746(-) A-I      intronic
chr9:100452500(-) A-I      intronic
chr9:100439883(-) A-I      intronic
chr9:100454332(-) A-I      intronic
chr9:100454534(-) A-I      intronic
chr9:100452699(-) A-I      intronic
chr9:100452598(-) A-I      intronic
chr9:100453779(-) A-I      intronic
chr9:100452775(-) A-I      intronic
chr9:100453023(-) A-I      intronic
chr9:100442629(-) A-I      intronic
chr9:100454053(-) A-I      intronic
chr9:100452705(-) A-I      intronic
chr9:100453932(-) A-I      intronic
chr9:100439856(-) A-I      intronic
chr9:100454016(-) A-I      intronic
chr9:100454411(-) A-I      intronic
chr9:100453933(-) A-I      intronic
chr9:100454511(-) A-I      intronic
chr9:100452571(-) A-I      intronic
chr9:100452897(-) A-I      intronic
chr9:100452719(-) A-I      intronic
chr9:100452873(-) A-I      intronic
chr9:100442601(-) A-I      intronic
chr9:100452630(-) A-I      intronic
chr9:100453739(-) A-I      intronic
chr9:100452865(-) A-I      intronic
chr9:100439931(-) A-I      intronic
chr9:100453948(-) A-I      intronic
chr9:100453766(-) A-I      intronic
chr9:100454043(-) A-I      intronic
chr9:100453024(-) A-I      intronic
chr9:100453912(-) A-I      intronic
chr9:100442587(-) A-I      intronic
chr9:100453961(-) A-I      intronic
chr9:100452609(-) A-I      intronic
chr9:100452833(-) A-I      intronic
chr9:100452522(-) A-I      intronic
chr9:100452661(-) A-I      intronic
chr9:100453818(-) A-I      intronic
chr9:100452754(-) A-I      intronic
chr9:100452940(-) A-I      intronic
chr9:100439895(-) A-I      intronic
chr9:100454035(-) A-I      intronic
chr9:100452807(-) A-I      intronic
chr9:100452540(-) A-I      intronic
chr9:100454425(-) A-I      intronic
chr9:100454461(-) A-I      intronic
chr9:100442615(-) A-I      intronic
chr9:100442655(-) A-I      intronic
chr9:100453874(-) A-I      intronic
chr9:100452558(-) A-I      intronic
chr9:100453816(-) A-I      intronic
chr9:100452708(-) A-I      intronic
chr9:100452969(-) A-I      intronic
chr9:100453812(-) A-I      intronic
chr9:100452941(-) A-I      intronic
chr9:100442619(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED XPA
chr9:100440410(-) A-I intron -    15342557
chr9:100440432(-) A-I intron -    15342557
chr9:100440466(-) A-I intron -    15342557
chr9:100440490(-) A-I intron -    15342557
chr9:100440498(-) A-I intron -    15342557
chr9:100440566(-) A-I intron -    15342557
chr9:100440574(-) A-I intron -    15342557
chr9:100440575(-) A-I intron -    15342557
chr9:100440672(-) A-I intron -    15342557
chr9:100440518(-) A-I intron -    22327324
chr9:100440563(-) A-I intron -    22327324
chr9:100453818(-) A-I intron -    21960545
chr9:100439690(-) T-C intron -    22484847
chr9:100439897(-) T-C intron -    22484847
chr9:100440518(-) T-C intron -    22484847
chr9:100440554(-) T-C intron -    22484847
chr9:100440563(-) T-C intron -    22484847
chr9:100442547(-) T-C intron -    22484847
chr9:100448931(-) T-C intron -    22484847
chr9:100452571(-) A-G intron -    22484847
chr9:100452897(-) A-G intron -    22484847
chr9:100452940(-) A-G intron -    22484847
chr9:100452941(-) A-G intron -    22484847
chr9:100453740(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase XPA
chr9:100437741-100437742(-) m6A 3'UTR//CDS//exon       27773535
chr9:100437764-100437765(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr9:100437790-100437791(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr9:100437801-100437802(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr9:100438060-100438061(-) m6A exon//intron       24981863//27773535
chr9:100444644-100444645(-) m6A CDS//intron       27773535
chr9:100444660-100444661(-) m6A CDS//intron       24981863//27773535
chr9:100444670-100444671(-) m6A CDS//intron       24981863//27773535
chr9:100447232-100447233(-) m6A CDS       24981863//27773535
chr9:100447248-100447249(-) m6A CDS//exon       24981863//27773535
chr9:100447272-100447273(-) m1A CDS//exon       26863410
chr9:100449395-100449396(-) m6A CDS//exon       24981863//27773535
chr9:100449430-100449431(-) m1A CDS//exon       26863410
chr9:100455971-100455972(-) m1A CDS//exon       26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate XPA
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv1-miR-H2-5p
Interactor2: XPA

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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