Basic Information:

  VIRBase ID:  

VHID00077404

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          NRTN:  NM_004558     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	NRTN
miRBase Accession/Entrez ID	MIMAT0008398	4902
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	NTN

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NRTN	chr19:5823918-5823919(+) m6A 5'UTR       24981863 chr19:5823953-5823954(+) m6A 5'UTR       24284625//24209618//24981863 chr19:5824030-5824031(+) m6A 5'UTR       24284625//22608085 chr19:5828256-5828257(+) m6A 3'UTR       25456834//24981863//22608085 chr19:5828293-5828294(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NRTN	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: NRTN

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg