Basic Information:

  VIRBase ID:  

VHID00077358

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          HOXC13:  NM_017410     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	HOXC13
miRBase Accession/Entrez ID	MIMAT0008398	3229
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ECTD9//HOX3//HOX3G

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HOXC13	chr12:54332616-54332617(+) m6A 5'UTR       24981863 chr12:54332751-54332752(+) m6A CDS       24209618//24981863 chr12:54332973-54332974(+) m6A CDS       24209618//24981863 chr12:54333360-54333361(+) m6A CDS       24284625//24981863 chr12:54338939-54338940(+) m6A CDS       24284625//22608085 chr12:54338975-54338976(+) m6A CDS       24284625//24981863//22608085 chr12:54339096-54339097(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr12:54339155-54339156(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr12:54339252-54339253(+) m6A 3'UTR       24284625//24981863//22608085 chr12:54339452-54339453(+) m6A 3'UTR       24284625//24981863 chr12:54339603-54339604(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr12:54339697-54339698(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr12:54339788-54339789(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr12:54339794-54339795(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr12:54339883-54339884(+) m6A 3'UTR       24284625//24981863//22608085 chr12:54339901-54339902(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HOXC13	Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: HOXC13

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg