Basic Information:

  VIRBase ID:  

VHID00077343

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H2-5p:  MIMAT0008398          GPER1:  NM_001039966     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H2-5p	GPER1
miRBase Accession/Entrez ID	MIMAT0008398	2852
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CEPR//CMKRL2//DRY12//FEG-1//GPCR-Br//GPER//GPR30//LERGU//LERGU2//LyGPR//mER

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPER1	chr7:1129613(+) A-I      intronic chr7:1129600(+) A-I      intronic chr7:1129597(+) A-I      intronic chr7:1129532(+) A-I      intronic chr7:1129264(+) A-I      intronic chr7:1129533(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPER1	chr7:1126462-1126463(+) m6A 5'UTR//intron       - chr7:1126500-1126501(+) m6A 5'UTR//intron       - chr7:1126807-1126808(+) m6A 5'UTR//intron       24284625 chr7:1127744-1127745(+) m6A 5'UTR//intron       24284625 chr7:1127788-1127789(+) m6A 5'UTR//intron       24284625 chr7:1131072-1131073(+) m6A 5'UTR       24284625 chr7:1131198-1131199(+) m6A 5'UTR       24284625 chr7:1131209-1131210(+) m6A 5'UTR       24284625 chr7:1131311-1131312(+) m6A 5'UTR       24284625//24981863//22575960 chr7:1131362-1131363(+) m6A 5'UTR       24284625//24981863//22575960 chr7:1131499-1131500(+) m6A CDS       24284625//24981863 chr7:1131614-1131615(+) m6A CDS       24284625 chr7:1131677-1131678(+) m6A CDS       24284625 chr7:1132322-1132323(+) m6A CDS//intron       24284625//27773535//22575960 chr7:1132351-1132352(+) m6A CDS//intron       24284625//27773535//22575960 chr7:1132361-1132362(+) m6A CDS//intron       24284625//27773535//22575960 chr7:1132390-1132391(+) m6A CDS//intron       24284625//27773535//22575960 chr7:1132409-1132410(+) m6A CDS//intron       24284625//22575960 chr7:1132448-1132449(+) m6A CDS//intron       24284625//22575960 chr7:1132492-1132493(+) m6A 3'UTR//intron       24284625//25456834//22575960 chr7:1132553-1132554(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960 chr7:1132583-1132584(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960 chr7:1132664-1132665(+) m6A 3'UTR//CDS       24284625//22575960 chr7:1132819-1132820(+) m6A 3'UTR//CDS       24284625//22575960 chr7:1132893-1132894(+) m6A 3'UTR//intron       24284625//22575960 chr7:1132923-1132924(+) m6A 3'UTR//intron       24284625//22575960 chr7:1133037-1133038(+) m6A 3'UTR//intron       24284625//22575960 chr7:1133240-1133241(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr7:1133246-1133247(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr7:1133284-1133285(+) m6A 3'UTR//CDS       24284625//24981863//22575960 chr7:1133346-1133347(+) m6A 3'UTR       24284625//24981863//27773535//22575960 chr7:1133369-1133370(+) m6A 3'UTR       24284625//27773535//22575960 chr7:1133430-1133431(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPER1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H2-5p
Interactor2: GPER1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg