Basic Information:

  VIRBase ID:  

VHID00076928

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H1-5p:  MIMAT0003744          RNF169:  NM_001098638     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H1-5p	RNF169
miRBase Accession/Entrez ID	MIMAT0003744	254225
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RNF169	chr11:74506390(+) A-I      intronic chr11:74476002(+) A-I      intronic chr11:74478145(+) A-I      intronic chr11:74478123(+) A-I      intronic chr11:74506781(+) A-I      intronic chr11:74476042(+) A-I      intronic chr11:74506394(+) A-I      intronic chr11:74464155(+) A-I      intronic chr11:74506657(+) A-I      intronic chr11:74464150(+) A-I      intronic chr11:74506119(+) A-I      intronic chr11:74475477(+) A-I      intronic chr11:74524829(+) A-I      intronic chr11:74463166(+) A-I      intronic chr11:74478985(+) A-I      intronic chr11:74464187(+) A-I      intronic chr11:74514045(+) A-I      intronic chr11:74525228(+) A-I      intronic chr11:74479939(+) A-I      intronic chr11:74506808(+) A-I      intronic chr11:74478984(+) A-I      intronic chr11:74463029(+) A-I      intronic chr11:74506691(+) A-I      intronic chr11:74524813(+) A-I      intronic chr11:74488816(+) A-I      intronic chr11:74479607(+) A-I      intronic chr11:74506787(+) A-I      intronic chr11:74465680(+) A-I      intronic chr11:74464274(+) A-I      intronic chr11:74478120(+) A-I      intronic chr11:74506791(+) A-I      intronic chr11:74506404(+) A-I      intronic chr11:74476007(+) A-I      intronic chr11:74464094(+) A-I      intronic chr11:74488815(+) A-I      intronic chr11:74485184(+) A-I      intronic chr11:74482642(+) A-I      intronic chr11:74463583(+) A-I      intronic chr11:74481951(+) A-I      intronic chr11:74481931(+) A-I      intronic chr11:74475019(+) A-I      intronic chr11:74481099(+) A-I      intronic chr11:74465679(+) A-I      intronic chr11:74463156(+) A-I      intronic chr11:74481010(+) A-I      intronic chr11:74479971(+) A-I      intronic chr11:74480934(+) A-I      intronic chr11:74479938(+) A-I      intronic chr11:74488901(+) A-I      intronic chr11:74479904(+) A-I      intronic chr11:74463068(+) A-I      intronic chr11:74464256(+) A-I      intronic chr11:74479545(+) A-I      intronic chr11:74482585(+) A-I      intronic chr11:74479410(+) A-I      intronic chr11:74479374(+) A-I      intronic chr11:74479573(+) A-I      intronic chr11:74464247(+) A-I      intronic chr11:74479835(+) A-I      intronic chr11:74475552(+) A-I      intronic chr11:74464153(+) A-I      intronic chr11:74464233(+) A-I      intronic chr11:74464198(+) A-I      intronic chr11:74481129(+) A-I      intronic chr11:74478146(+) A-I      intronic chr11:74482626(+) A-I      intronic chr11:74478807(+) A-I      intronic chr11:74464193(+) A-I      intronic chr11:74478119(+) A-I      intronic chr11:74480865(+) A-I      intronic chr11:74479883(+) A-I      intronic chr11:74482869(+) A-I      intronic chr11:74476001(+) A-I      intronic chr11:74512734(+) A-I      intronic chr11:74480961(+) A-I      intronic chr11:74463091(+) A-I      intronic chr11:74480918(+) A-I      intronic chr11:74476198(+) A-I      intronic chr11:74479580(+) A-I      intronic chr11:74513436(+) A-I      intronic chr11:74479432(+) A-I      intronic chr11:74475033(+) A-I      intronic chr11:74463202(+) A-I      intronic chr11:74480965(+) A-I      intronic chr11:74524942(+) A-I      intronic chr11:74465707(+) A-I      intronic chr11:74485244(+) A-I      intronic chr11:74479581(+) A-I      intronic chr11:74480996(+) A-I      intronic chr11:74485991(+) A-I      intronic chr11:74485336(+) A-I      intronic chr11:74482840(+) A-I      intronic chr11:74482035(+) A-I      intronic chr11:74480006(+) A-I      intronic chr11:74463587(+) A-I      intronic chr11:74474945(+) A-I      intronic chr11:74464196(+) A-I      intronic chr11:74475034(+) A-I      intronic chr11:74479985(+) A-I      intronic chr11:74482720(+) A-I      intronic chr11:74463197(+) A-I      intronic chr11:74465815(+) A-I      intronic chr11:74464143(+) A-I      intronic chr11:74479531(+) A-I      intronic chr11:74479020(+) A-I      intronic chr11:74463297(+) A-I      intronic chr11:74514270(+) A-I      intronic chr11:74482114(+) A-I      intronic chr11:74464180(+) A-I      intronic chr11:74475512(+) A-I      intronic chr11:74475321(+) A-I      intronic chr11:74525216(+) A-I      intronic chr11:74479832(+) A-I      intronic chr11:74475310(+) A-I      intronic chr11:74479945(+) A-I      intronic chr11:74461699(+) A-I      intronic chr11:74481928(+) A-I      intronic chr11:74463198(+) A-I      intronic chr11:74497493(+) A-I      intronic chr11:74479908(+) A-I      intronic chr11:74505974(+) A-I      intronic chr11:74485745(+) A-I      intronic chr11:74482590(+) A-I      intronic chr11:74476229(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RNF169	chr11:74524809(+) A-I intron -    22327324 chr11:74525369(+) A-I intron -    22327324 chr11:74525373(+) A-I intron -    22327324 chr11:74525635(+) A-I intron -    22327324 chr11:74529718(+) A-I intron -    22327324 chr11:74534530(+) A-I intron -    22327324 chr11:74475310(+) A-G intron -    22484847 chr11:74478120(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RNF169	chr11:74460030-74460031(+) m6A CDS       - chr11:74460056-74460057(+) m6A CDS       - chr11:74521257-74521258(+) m6A CDS       24981863 chr11:74521303-74521304(+) m6A CDS       27773535 chr11:74521326-74521327(+) m6A CDS       27773535 chr11:74521344-74521345(+) m6A CDS       27773535 chr11:74545774-74545775(+) Am CDS       - chr11:74546648-74546649(+) m6A CDS       24284625 chr11:74546781-74546782(+) m6A CDS       24284625//24209618//24981863//22608085 chr11:74546786-74546787(+) m6A CDS       24284625//24209618//24981863//22608085 chr11:74546832-74546833(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr11:74546891-74546892(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr11:74546911-74546912(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr11:74546952-74546953(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr11:74546983-74546984(+) m6A CDS       24284625//24209618//24981863//22608085 chr11:74547132-74547133(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547175-74547176(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547186-74547187(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547191-74547192(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547229-74547230(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547246-74547247(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547268-74547269(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr11:74547326-74547327(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547331-74547332(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547386-74547387(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547412-74547413(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547430-74547431(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547519-74547520(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547529-74547530(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547543-74547544(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547564-74547565(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547574-74547575(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547605-74547606(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547653-74547654(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547703-74547704(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74547874-74547875(+) m6A 3'UTR//intron       24284625//24981863 chr11:74548095-74548096(+) m6A 3'UTR//intron       24981863 chr11:74548103-74548104(+) m6A 3'UTR//intron       24981863 chr11:74548177-74548178(+) m6A 3'UTR//intron       24981863 chr11:74550791-74550792(+) m6A 3'UTR//intron       27773535 chr11:74551518-74551519(+) m6A 3'UTR//intron       - chr11:74552357-74552358(+) m6A 3'UTR//intron       27773535 chr11:74553218-74553219(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74553273-74553274(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74553280-74553281(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74553286-74553287(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:74553326-74553327(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:74553367-74553368(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:74553443-74553444(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv1-miR-H1-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	RNF169	Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H1-5p
Interactor2: RNF169

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg