Basic Information:

  VIRBase ID:  

VHID00076325

  Virus:  

Human alphaherpesvirus 1 (HSV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv1-miR-H1-5p:  MIMAT0003744          TMEM60:  NM_032936     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv1-miR-H1-5p	TMEM60
miRBase Accession/Entrez ID	MIMAT0003744	85025
Organism	Human alphaherpesvirus 1 (HSV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C7orf35//DC32

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM60	chr7:77424471(-) A-I      intronic chr7:77424314(-) A-I      intronic chr7:77424617(-) A-I      intronic chr7:77424818(-) A-I      intronic chr7:77425290(-) A-I      intronic chr7:77425374(-) A-I      intronic chr7:77425425(-) A-I      intronic chr7:77425443(-) A-I      intronic chr7:77424389(-) A-I      intronic chr7:77424384(-) A-I      intronic chr7:77424831(-) A-I      intronic chr7:77425458(-) A-I      intronic chr7:77425419(-) A-I      intronic chr7:77424388(-) A-I      intronic chr7:77424376(-) A-I      intronic chr7:77424402(-) A-I      intronic chr7:77425352(-) A-I      intronic chr7:77424773(-) A-I      intronic chr7:77424350(-) A-I      intronic chr7:77424322(-) A-I      intronic chr7:77424720(-) A-I      intronic chr7:77425375(-) A-I      intronic chr7:77424640(-) A-I      intronic chr7:77425534(-) A-I      intronic chr7:77424633(-) A-I      intronic chr7:77425346(-) A-I      intronic chr7:77425289(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM60	chr7:77423049-77423050(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr7:77423134-77423135(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr7:77423154-77423155(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr7:77423198-77423199(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr7:77423292-77423293(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr7:77423321-77423322(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr7:77423393-77423394(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr7:77423399-77423400(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr7:77423589-77423590(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr7:77423612-77423613(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr7:77423698-77423699(-) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr7:77427628-77427629(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr7:77427640-77427641(-) m6A 5'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr7:77427708-77427709(-) m6A 5'UTR       24981863//27773535//22608085 chr7:77427747-77427748(-) m6A 5'UTR       24981863//27773535//22608085 chr7:77427782-77427783(-) m6A 5'UTR       24981863//27773535//22608085 chr7:77427841-77427842(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv1-miR-H1-5p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	TMEM60	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv1-miR-H1-5p
Interactor2: TMEM60

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg