Detail Information

Basic Information:


  VIRBase ID:  

VHID00071533

  Virus:  

Gallid alphaherpesvirus 3

  Host:  

Gallus gallus

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol mdv2-miR-M15-5p SQSTM1
miRBase
Accession/Entrez ID		 MIMAT0004453 770805
Organism Gallid alphaherpesvirus 3 Gallus gallus
Category miRNA mRNA
Alias - -

Interaction Network (The top 100 interactions):


Interactor1: mdv2-miR-M15-5p
Interactor2: SQSTM1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase

References:


PMID 24449754 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line MSB1 cells Interactor2 expression None
Description A list of all RISC binding clusters identified, with their predicted miRNAs, is given in Table S1 in the supplemental material. Of these 16,585 binding clusters, PARalyzer predicted 1, 104 cellular mRNAs that were bound by one or more MDV-1 miRNAs, while 1, 183 cellular mRNAs were predicted to be bound by one or more MDV-2 miRNAs.

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