Detail Information

Basic Information:


  VIRBase ID:  

VHID00068166

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-9 NMD3
miRBase
Accession/Entrez ID		 zikv-mir-9 51068
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CGI-07

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NMD3
chr3:160962152(+) A-I      intronic
chr3:160966171(+) A-I      intronic
chr3:160966151(+) A-I      intronic
chr3:160966184(+) A-I      intronic
chr3:160965826(+) A-I      intronic
chr3:160966157(+) A-I      intronic
chr3:160966167(+) A-I      intronic
chr3:160965774(+) A-I      intronic
chr3:160965434(+) A-I      intronic
chr3:160966023(+) A-I      intronic
chr3:160952064(+) A-I      intronic
chr3:160965809(+) A-I      intronic
chr3:160955478(+) A-I      intronic
chr3:160965705(+) A-I      intronic
chr3:160965710(+) A-I      intronic
chr3:160966096(+) A-I      intronic
chr3:160965457(+) A-I      intronic
chr3:160965821(+) A-I      intronic
chr3:160965757(+) A-I      intronic
chr3:160966092(+) A-I      intronic
chr3:160944091(+) A-I      intronic
chr3:160965346(+) A-I      intronic
chr3:160965521(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NMD3
chr3:160948052(+) G-A intron -    22484847
chr3:160951977(+) C-G intron -    22484847
chr3:160958331(+) G-T intron -    22484847
chr3:160965346(+) A-G intron -    22484847
chr3:160965360(+) A-G intron -    22484847
chr3:160965671(+) A-G intron -    22484847
chr3:160965705(+) A-G intron -    22484847
chr3:160965710(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NMD3
chr3:160945071-160945072(+) Y CDS//exon       26075521
chr3:160956160-160956161(+) Am intron       -
chr3:160964223-160964224(+) m6A CDS       27773535
chr3:160965095-160965096(+) m6A CDS       24981863//27773535
chr3:160967268-160967269(+) m6A CDS       24981863//27773535
chr3:160967290-160967291(+) m6A CDS       24981863//27773535
chr3:160967326-160967327(+) m6A CDS       24981863//27773535
chr3:160968642-160968643(+) m6A CDS       24284625//24981863//27773535//22608085
chr3:160968711-160968712(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:160968742-160968743(+) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr3:160968809-160968810(+) m6A 3'UTR//intron       24981863//27773535//22608085
chr3:160968819-160968820(+) m6A 3'UTR//intron       24981863//27773535//22608085
chr3:160968846-160968847(+) m6A 3'UTR//intron       24981863//27773535//22608085
chr3:160968855-160968856(+) m6A 3'UTR//intron       24981863//27773535//22608085
chr3:160969102-160969103(+) m6A 3'UTR//intron       27773535
chr3:160969597-160969598(+) m6A 3'UTR//intron       27773535
chr3:160969648-160969649(+) m6A 3'UTR//intron       27773535
chr3:160969717-160969718(+) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NMD3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-9
Interactor2: NMD3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...