Detail Information

Basic Information:


  VIRBase ID:  

VHID00066880

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-9 GARS1
miRBase
Accession/Entrez ID		 zikv-mir-9 2617
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CMT2D//DSMAV//GARS//GlyRS//HMN5//HMN5A//SMAD1//SMAJI

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GARS1
chr7:30664822(+) A-I      intronic
chr7:30664757(+) A-I      intronic
chr7:30664676(+) A-I      intronic
chr7:30664663(+) A-I      intronic
chr7:30664659(+) A-I      intronic
chr7:30662610(+) A-I      intronic
chr7:30662596(+) A-I      intronic
chr7:30662538(+) A-I      intronic
chr7:30662537(+) A-I      intronic
chr7:30662533(+) A-I      intronic
chr7:30658268(+) A-I      intronic
chr7:30658044(+) A-I      intronic
chr7:30666091(+) A-I      intronic
chr7:30666464(+) A-I      intronic
chr7:30666503(+) A-I      intronic
chr7:30667984(+) A-I      intronic
chr7:30667981(+) A-I      intronic
chr7:30666552(+) A-I      intronic
chr7:30666542(+) A-I      intronic
chr7:30666450(+) A-I      intronic
chr7:30666421(+) A-I      intronic
chr7:30666236(+) A-I      intronic
chr7:30666131(+) A-I      intronic
chr7:30666083(+) A-I      intronic
chr7:30666041(+) A-I      intronic
chr7:30666017(+) A-I      intronic
chr7:30667862(+) A-I      intronic
chr7:30667930(+) A-I      intronic
chr7:30666454(+) A-I      intronic
chr7:30666344(+) A-I      intronic
chr7:30668001(+) A-I      intronic
chr7:30666476(+) A-I      intronic
chr7:30666343(+) A-I      intronic
chr7:30664769(+) A-I      intronic
chr7:30666229(+) A-I      intronic
chr7:30667975(+) A-I      intronic
chr7:30667901(+) A-I      intronic
chr7:30666435(+) A-I      intronic
chr7:30666470(+) A-I      intronic
chr7:30662539(+) A-I      intronic
chr7:30662567(+) A-I      intronic
chr7:30666095(+) A-I      intronic
chr7:30664598(+) A-I      intronic
chr7:30666247(+) A-I      intronic
chr7:30666149(+) A-I      intronic
chr7:30662637(+) A-I      intronic
chr7:30666374(+) A-I      intronic
chr7:30658165(+) A-I      intronic
chr7:30664590(+) A-I      intronic
chr7:30664688(+) A-I      intronic
chr7:30666156(+) A-I      intronic
chr7:30667946(+) A-I      intronic
chr7:30666241(+) A-I      intronic
chr7:30664803(+) A-I      intronic
chr7:30664734(+) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GARS1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-9
Interactor2: GARS1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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