Detail Information

Basic Information:


  VIRBase ID:  

VHID00066314

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-8 PPP1R37
miRBase
Accession/Entrez ID		 zikv-mir-8 284352
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - LRRC68

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PPP1R37
chr19:45612000(+) A-I      ncRNA
chr19:45611993(+) A-I      ncRNA
chr19:45612172(+) A-I      ncRNA
chr19:45632740(+) A-I      intronic
chr19:45632737(+) A-I      intronic
chr19:45632686(+) A-I      intronic
chr19:45632746(+) A-I      intronic
chr19:45612065(+) A-I      ncRNA
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PPP1R37
chr19:45610296(+) A-I intron -    22327324
chr19:45637957(+) A-I intron -    22327324
chr19:45638386(+) A-I intron -    22327324
chr19:45597730(+) A-G intron -    22484847
chr19:45598530(+) A-G intron -    22484847
chr19:45610622(+) A-G intron -    22484847
chr19:45610710(+) A-G intron -    22484847
chr19:45610804(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PPP1R37
chr19:45596516-45596517(+) m6A 5'UTR//exon       24209618//25456834//24981863//27773536//22608085
chr19:45596526-45596527(+) m6A 5'UTR//exon       24209618//25456834//24981863//27773536//22608085
chr19:45641831-45641832(+) m6A CDS//exon//intron       -
chr19:45643503-45643504(+) m6A CDS//exon//intron       -
chr19:45643530-45643531(+) m6A CDS//exon//intron       -
chr19:45643783-45643784(+) m6A CDS//exon       -
chr19:45645364-45645365(+) m6A CDS//exon       24284625
chr19:45645578-45645579(+) m6A CDS//exon       24284625
chr19:45645584-45645585(+) m6A CDS//exon       24284625
chr19:45645608-45645609(+) m6A CDS//exon       24284625
chr19:45645795-45645796(+) m6A exon//intron       24981863
chr19:45645801-45645802(+) m6A exon//intron       24981863
chr19:45645812-45645813(+) m6A exon//intron       24981863
chr19:45645852-45645853(+) m6A exon//intron       24981863
chr19:45645856-45645857(+) m6A exon//intron       25456834
chr19:45645867-45645868(+) m6A exon//intron       25456834//24981863
chr19:45645892-45645893(+) m6A exon//intron       25456834//24981863
chr19:45645963-45645964(+) m6A exon//intron       25456834//24981863
chr19:45646083-45646084(+) m6A exon//intron       -
chr19:45646133-45646134(+) m6A exon//intron       -
chr19:45646167-45646168(+) m6A exon//intron       -
chr19:45646844-45646845(+) m6A CDS//exon       24284625
chr19:45648428-45648429(+) m6A CDS//exon       -
chr19:45648468-45648469(+) m6A CDS//exon       -
chr19:45648489-45648490(+) m6A CDS//exon       -
chr19:45648502-45648503(+) m6A CDS//exon       -
chr19:45648742-45648743(+) m6A CDS//exon       24284625//24209618//25456834//24981863
chr19:45648824-45648825(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr19:45648830-45648831(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:45648836-45648837(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:45648842-45648843(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:45648889-45648890(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085
chr19:45648920-45648921(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr19:45648938-45648939(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr19:45649154-45649155(+) m6A CDS//exon       24284625//25456834
chr19:45649648-45649649(+) m6A CDS//exon       24981863
chr19:45649721-45649722(+) m6A CDS//exon       24284625//24981863
chr19:45650045-45650046(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085
chr19:45650099-45650100(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr19:45650257-45650258(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863
chr19:45650267-45650268(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863
chr19:45650379-45650380(+) m6A 3'UTR//exon       24284625//24209618
chr19:45650522-45650523(+) m6A 3'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PPP1R37
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-8
Interactor2: PPP1R37

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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