Detail Information

Basic Information:


  VIRBase ID:  

VHID00063556

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-8 MCM5
miRBase
Accession/Entrez ID		 zikv-mir-8 4174
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CDC46//MGORS8//P1-CDC46

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MCM5
chr22:35805366(+) A-I      intronic
chr22:35805020(+) A-I      intronic
chr22:35798811(+) A-I      intronic
chr22:35798676(+) A-I      intronic
chr22:35798702(+) A-I      intronic
chr22:35805357(+) A-I      intronic
chr22:35805293(+) A-I      intronic
chr22:35805036(+) A-I      intronic
chr22:35801460(+) A-I      intronic
chr22:35798211(+) A-I      intronic
chr22:35801794(+) A-I      intronic
chr22:35805230(+) A-I      intronic
chr22:35798776(+) A-I      intronic
chr22:35798221(+) A-I      intronic
chr22:35801948(+) A-I      intronic
chr22:35801634(+) A-I      intronic
chr22:35798799(+) A-I      intronic
chr22:35801748(+) A-I      intronic
chr22:35805444(+) A-I      intronic
chr22:35801088(+) A-I      intronic
chr22:35805097(+) A-I      intronic
chr22:35805312(+) A-I      intronic
chr22:35799981(+) A-I      intronic
chr22:35801434(+) A-I      intronic
chr22:35816966(+) A-I      intronic
chr22:35805381(+) A-I      intronic
chr22:35801459(+) A-I      intronic
chr22:35801857(+) A-I      intronic
chr22:35801747(+) A-I      intronic
chr22:35805095(+) A-I      intronic
chr22:35805447(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MCM5
chr22:35798215(+) A-G intron -    22484847
chr22:35798737(+) A-G intron -    22484847
chr22:35805085(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MCM5
chr22:35796113-35796114(+) m6A 5'UTR       -
chr22:35796139-35796140(+) m6A 5'UTR//exon       -
chr22:35796194-35796195(+) m6A 5'UTR//intron       24284625
chr22:35797762-35797763(+) m6A 3'UTR//intron       -
chr22:35799205-35799206(+) m6A 3'UTR//CDS//intron       -
chr22:35799279-35799280(+) m6A CDS//intron       22575960
chr22:35799479-35799480(+) m6A CDS//intron       22575960
chr22:35802549-35802550(+) m6A 5'UTR//CDS//intron       24284625//22575960
chr22:35804432-35804433(+) m6A CDS//intron       22575960
chr22:35806765-35806766(+) m6A CDS//exon       24284625
chr22:35806888-35806889(+) m6A CDS//exon       24284625
chr22:35807261-35807262(+) m6A exon//intron       24284625
chr22:35807269-35807270(+) m6A exon//intron       24284625
chr22:35808625-35808626(+) m6A CDS//exon       22575960
chr22:35809879-35809880(+) m6A CDS//exon       22575960
chr22:35809896-35809897(+) m6A CDS//exon       22575960
chr22:35809920-35809921(+) m6A CDS//exon       22575960
chr22:35809928-35809929(+) m6A CDS//exon       22575960
chr22:35811856-35811857(+) m6A CDS//exon       22575960
chr22:35811879-35811880(+) m6A CDS//exon       22575960
chr22:35812379-35812380(+) m6A CDS//exon       22575960
chr22:35812652-35812653(+) m6A CDS//exon       22575960
chr22:35813784-35813785(+) m6A CDS//exon       22575960
chr22:35815915-35815916(+) m6A CDS//exon       22575960
chr22:35815923-35815924(+) m6A CDS//exon       22575960
chr22:35819233-35819234(+) m6A CDS//exon       -
chr22:35819320-35819321(+) m6A CDS//exon       24284625//22575960
chr22:35819427-35819428(+) m6A exon//intron       24284625//24209618
chr22:35819453-35819454(+) m6A exon//intron       24284625//24209618
chr22:35819472-35819473(+) m6A exon//intron       24284625//24209618
chr22:35820266-35820267(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr22:35820274-35820275(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr22:35820329-35820330(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr22:35820357-35820358(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr22:35820399-35820400(+) Y 3'UTR//exon       25219674//26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MCM5
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-8
Interactor2: MCM5

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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