Detail Information

Basic Information:


  VIRBase ID:  

VHID00063348

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-8 GALK1
miRBase
Accession/Entrez ID		 zikv-mir-8 2584
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - GALK//GK1//HEL-S-19

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GALK1
chr17:73758298(-) A-I      intronic
chr17:73758290(-) A-I      intronic
chr17:73757570(-) A-I      intronic
chr17:73757554(-) A-I      intronic
chr17:73757460(-) A-I      intronic
chr17:73756267(-) A-I      intronic
chr17:73756313(-) A-I      intronic
chr17:73756335(-) A-I      intronic
chr17:73757543(-) A-I      intronic
chr17:73756392(-) A-I      intronic
chr17:73757598(-) A-I      intronic
chr17:73757452(-) A-I      intronic
chr17:73758289(-) A-I      intronic
chr17:73756209(-) A-I      intronic
chr17:73756433(-) A-I      intronic
chr17:73756446(-) A-I      intronic
chr17:73758371(-) A-I      intronic
chr17:73756662(-) A-I      intronic
chr17:73756235(-) A-I      intronic
chr17:73757532(-) A-I      intronic
chr17:73757576(-) A-I      intronic
chr17:73756342(-) A-I      intronic
chr17:73756299(-) A-I      intronic
chr17:73758335(-) A-I      intronic
chr17:73757468(-) A-I      intronic
chr17:73756401(-) A-I      intronic
chr17:73756339(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GALK1
chr17:73756942(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GALK1
chr17:73754123-73754124(-) m6A 3'UTR//exon       -
chr17:73754192-73754193(-) m6A CDS//exon       27773536
chr17:73754420-73754421(-) m6A CDS//exon//intron       27773536
chr17:73754670-73754671(-) m6A 3'UTR//CDS       24284625//27371828//27773536
chr17:73758843-73758844(-) m1A 3'UTR//CDS//exon       26863196
chr17:73761080-73761081(-) m6A CDS//exon       24284625//27371828//27773536
chr17:73761088-73761089(-) m6A CDS//exon       24284625//27371828//27773536
chr17:73761202-73761203(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr17:73761359-73761360(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GALK1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-8
Interactor2: GALK1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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