Detail Information

Basic Information:


  VIRBase ID:  

VHID00061821

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 RASGEF1B
miRBase
Accession/Entrez ID		 zikv-mir-7 153020
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - GPIG4

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RASGEF1B
chr4:82371934(-) A-I      intronic
chr4:82371931(-) A-I      intronic
chr4:82372015(-) A-I      intronic
chr4:82371948(-) A-I      intronic
chr4:82371935(-) A-I      intronic
chr4:82371949(-) A-I      intronic
chr4:82371960(-) A-I      intronic
chr4:82371815(-) A-I      intronic
chr4:82371907(-) A-I      intronic
chr4:82371796(-) A-I      intronic
chr4:82370239(-) A-I      intronic
chr4:82370216(-) A-I      intronic
chr4:82370080(-) A-I      intronic
chr4:82370066(-) A-I      intronic
chr4:82371834(-) A-I      intronic
chr4:82369991(-) A-I      intronic
chr4:82365884(-) A-I      intronic
chr4:82370212(-) A-I      intronic
chr4:82371955(-) A-I      intronic
chr4:82356719(-) A-I      intronic
chr4:82356723(-) A-I      intronic
chr4:82356670(-) A-I      intronic
chr4:82371922(-) A-I      intronic
chr4:82356692(-) A-I      intronic
chr4:82370011(-) A-I      intronic
chr4:82370031(-) A-I      intronic
chr4:82371902(-) A-I      intronic
chr4:82357208(-) A-I      intronic
chr4:82357155(-) A-I      intronic
chr4:82371995(-) A-I      intronic
chr4:82371991(-) A-I      intronic
chr4:82370238(-) A-I      intronic
chr4:82371872(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RASGEF1B
chr4:82371955(-) A-I intron -    21960545
chr4:82371957(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RASGEF1B
chr4:82348290-82348291(-) m6A 3'UTR       24284625
chr4:82348376-82348377(-) m6A 3'UTR       24284625
chr4:82348398-82348399(-) m6A 3'UTR       24284625//26404942//22608085
chr4:82348434-82348435(-) m6A 3'UTR       24284625//26404942//22608085
chr4:82348455-82348456(-) m6A 3'UTR       24284625//26404942//22608085
chr4:82348543-82348544(-) m6A 3'UTR       24284625//25456834//26404942//22608085
chr4:82348561-82348562(-) m6A 3'UTR       24284625//25456834//26404942//22608085
chr4:82348694-82348695(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22608085
chr4:82348713-82348714(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22608085
chr4:82348729-82348730(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22608085
chr4:82348755-82348756(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22608085
chr4:82348767-82348768(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27371828//22608085
chr4:82348820-82348821(-) m6A 3'UTR       24284625//24981863//26404942//22608085
chr4:82348832-82348833(-) m6A 3'UTR       24284625//24981863//26404942//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RASGEF1B
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: RASGEF1B

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...