Detail Information

Basic Information:


  VIRBase ID:  

VHID00061280

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 MED8
miRBase
Accession/Entrez ID		 zikv-mir-7 112950
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - ARC32

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MED8
chr1:43850552-43850553(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr1:43850593-43850594(-) m6A 3'UTR//intron       24284625//24981863
chr1:43850613-43850614(-) m6A 3'UTR//intron       24284625//24981863
chr1:43851741-43851742(-) m6A CDS//exon       27773535//22575960
chr1:43851805-43851806(-) m6A CDS//exon       -
chr1:43851820-43851821(-) m6A CDS//exon       27371828
chr1:43851860-43851861(-) m6A CDS//exon       27371828
chr1:43851876-43851877(-) m6A CDS//exon       27371828
chr1:43851884-43851885(-) m6A CDS//exon       27371828
chr1:43851983-43851984(-) m6A exon//intron       27371828
chr1:43851990-43851991(-) m6A exon//intron       27371828
chr1:43852236-43852237(-) m6A exon//intron       27371828
chr1:43852248-43852249(-) m6A exon//intron       27371828
chr1:43852306-43852307(-) m6A CDS//exon       27371828
chr1:43852582-43852583(-) m6A CDS//exon       -
chr1:43852608-43852609(-) m6A CDS//exon       -
chr1:43855473-43855474(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MED8
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: MED8

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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