Detail Information

Basic Information:


  VIRBase ID:  

VHID00060774

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 SH3BGRL3
miRBase
Accession/Entrez ID		 zikv-mir-7 83442
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - HEL-S-297//SH3BP-1//TIP-B1

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SH3BGRL3
chr1:26606552-26606553(+) m6A 5'UTR//CDS       24981863
chr1:26607322-26607323(+) m6A CDS       24284625//22575960
chr1:26607334-26607335(+) m6A CDS       24284625//22575960
chr1:26607409-26607410(+) m6A CDS       24284625//22575960
chr1:26607467-26607468(+) m6A CDS//intron       24284625//24981863
chr1:26607549-26607550(+) m6A 3'UTR//CDS       24284625//25456834//24981863//22575960
chr1:26607577-26607578(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22575960
chr1:26607582-26607583(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22575960
chr1:26607643-26607644(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr1:26607687-26607688(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SH3BGRL3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: SH3BGRL3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...