Detail Information

Basic Information:


  VIRBase ID:  

VHID00058723

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 LEMD3
miRBase
Accession/Entrez ID		 zikv-mir-7 23592
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - MAN1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LEMD3
chr12:65638569(+) A-I      intronic
chr12:65638577(+) A-I      intronic
chr12:65638456(+) A-I      intronic
chr12:65639028(+) A-I      intronic
chr12:65607106(+) A-I      intronic
chr12:65625426(+) A-I      intronic
chr12:65638473(+) A-I      intronic
chr12:65625207(+) A-I      intronic
chr12:65625203(+) A-I      intronic
chr12:65638532(+) A-I      intronic
chr12:65638542(+) A-I      intronic
chr12:65625193(+) A-I      intronic
chr12:65639047(+) A-I      intronic
chr12:65606266(+) A-I      intronic
chr12:65607242(+) A-I      intronic
chr12:65638627(+) A-I      intronic
chr12:65639118(+) A-I      intronic
chr12:65638672(+) A-I      intronic
chr12:65639199(+) A-I      intronic
chr12:65638472(+) A-I      intronic
chr12:65607085(+) A-I      intronic
chr12:65638633(+) A-I      intronic
chr12:65638610(+) A-I      intronic
chr12:65639052(+) A-I      intronic
chr12:65622367(+) A-I      intronic
chr12:65638552(+) A-I      intronic
chr12:65638715(+) A-I      intronic
chr12:65638490(+) A-I      intronic
chr12:65639126(+) A-I      intronic
chr12:65638588(+) A-I      intronic
chr12:65631935(+) A-I      intronic
chr12:65638550(+) A-I      intronic
chr12:65585675(+) A-I      intronic
chr12:65638643(+) A-I      intronic
chr12:65639050(+) A-I      intronic
chr12:65638714(+) A-I      intronic
chr12:65638470(+) A-I      intronic
chr12:65638584(+) A-I      intronic
chr12:65625359(+) A-I      intronic
chr12:65637547(+) A-I      intronic
chr12:65638961(+) A-I      intronic
chr12:65638549(+) A-I      intronic
chr12:65631847(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LEMD3
chr12:65566608(+) T-C intron -    22484847
chr12:65622367(+) A-G intron -    22484847
chr12:65622398(+) G-A intron -    22484847
chr12:65638549(+) A-G intron -    22484847
chr12:65638552(+) A-G intron -    22484847
chr12:65639050(+) A-G intron -    22484847
chr12:65639052(+) A-G intron -    22484847
chr12:65639126(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LEMD3
chr12:65563360-65563361(+) m6A 5'UTR       24284625//24981863//22608085
chr12:65563462-65563463(+) m6A CDS//exon       24284625//24981863//22608085
chr12:65563508-65563509(+) m1A CDS//exon       26863196
chr12:65563569-65563570(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr12:65563615-65563616(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr12:65563682-65563683(+) m6A CDS//exon       24209618//25456834//24981863//22575960//22608085
chr12:65563830-65563831(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65563857-65563858(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564000-65564001(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr12:65564067-65564068(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr12:65564075-65564076(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr12:65564102-65564103(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr12:65564145-65564146(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564154-65564155(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564194-65564195(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564240-65564241(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564297-65564298(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564320-65564321(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564361-65564362(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564373-65564374(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564424-65564425(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr12:65564464-65564465(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr12:65564502-65564503(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:65564540-65564541(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:65564577-65564578(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr12:65564691-65564692(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr12:65564704-65564705(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:65564719-65564720(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:65564731-65564732(+) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr12:65564842-65564843(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr12:65564867-65564868(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr12:65564890-65564891(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr12:65604711-65604712(+) m6A CDS//exon       24209618//25456834//24981863//27773535//22575960//22608085
chr12:65604725-65604726(+) m6A CDS       24209618//25456834//24981863//27773535//22575960//22608085
chr12:65609768-65609769(+) m6A CDS       24209618//24981863//27773535//22608085
chr12:65609781-65609782(+) m6A CDS       24209618//24981863//27773535//22608085
chr12:65640038-65640039(+) m6A CDS//exon       24981863//22608085
chr12:65640046-65640047(+) m6A CDS//exon       24981863//22608085
chr12:65640072-65640073(+) m6A CDS//exon       24981863//22608085
chr12:65640128-65640129(+) m6A 3'UTR//exon       24981863//22608085
chr12:65640354-65640355(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LEMD3
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: LEMD3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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