Detail Information

Basic Information:


  VIRBase ID:  

VHID00056812

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 RPS8
miRBase
Accession/Entrez ID		 zikv-mir-7 6202
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - S8

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RPS8
chr1:45243713(+) A-I      Syn:Lys->Lys
chr1:45243726(+) A-I      NonSyn:Lys->Glu
chr1:45243723(+) A-I      NonSyn:Lys->Glu
chr1:45243714(+) A-I      NonSyn:Lys->Glu
chr1:45243712(+) A-I      NonSyn:Lys->Arg
chr1:45242996(+) A-I      intronic
chr1:45242943(+) A-I      intronic
chr1:45242544(+) A-I      intronic
chr1:45242844(+) A-I      intronic
chr1:45243005(+) A-I      intronic
chr1:45242629(+) A-I      intronic
chr1:45242538(+) A-I      intronic
chr1:45242986(+) A-I      intronic
chr1:45242940(+) A-I      intronic
chr1:45242843(+) A-I      intronic
chr1:45242561(+) A-I      intronic
chr1:45242872(+) A-I      intronic
chr1:45242883(+) A-I      intronic
chr1:45242555(+) A-I      intronic
chr1:45242536(+) A-I      intronic
chr1:45242963(+) A-I      intronic
chr1:45242686(+) A-I      intronic
chr1:45243017(+) A-I      intronic
chr1:45242539(+) A-I      intronic
chr1:45242530(+) A-I      intronic
chr1:45242676(+) A-I      intronic
chr1:45242978(+) A-I      intronic
chr1:45242574(+) A-I      intronic
chr1:45243004(+) A-I      intronic
chr1:45242861(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPS8
chr1:45242676(+) A-I intron -    19478186
chr1:45242861(+) A-I intron -    15258596
chr1:45242872(+) A-I intron -    15258596
chr1:45242978(+) A-I intron -    15258596   //22327324
chr1:45242539(+) A-G intron -    22484847
chr1:45242861(+) A-G intron -    22484847
chr1:45242940(+) A-G intron -    22484847
chr1:45242963(+) A-G intron -    22484847
chr1:45242978(+) A-G intron -    22484847
chr1:45242986(+) A-G intron -    22484847
chr1:45243005(+) A-G intron -    22484847
chr1:45243017(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPS8
chr1:45241183-45241184(+) m6A 5'UTR//intron       24981863
chr1:45241220-45241221(+) m6A 5'UTR//intron       25456834//24981863
chr1:45241225-45241226(+) m6A 5'UTR//intron       24284625//25456834//24981863
chr1:45241381-45241382(+) m6A exon//intron       24284625
chr1:45241572-45241573(+) Gm exon//intron       -
chr1:45241717-45241718(+) m6A CDS//exon       22575960
chr1:45241740-45241741(+) m6A CDS//exon       22575960
chr1:45243299-45243300(+) m6A CDS//exon       27773535//22575960
chr1:45243356-45243357(+) m6A CDS//exon       27773535//22575960
chr1:45243553-45243554(+) Gm intron       -
chr1:45243671-45243672(+) m6A CDS//exon       24981863//27773535
chr1:45243696-45243697(+) m6A CDS//exon       24981863//27773535
chr1:45244075-45244076(+) m6A exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPS8
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: RPS8

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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