Detail Information

Basic Information:


  VIRBase ID:  

VHID00056800

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 RPL27
miRBase
Accession/Entrez ID		 zikv-mir-7 6155
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - DBA16//L27

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RPL27
chr17:41152801(+) A-I      intronic
chr17:41152672(+) A-I      intronic
chr17:41153023(+) A-I      intronic
chr17:41152955(+) A-I      intronic
chr17:41152896(+) A-I      intronic
chr17:41152876(+) A-I      intronic
chr17:41152839(+) A-I      intronic
chr17:41152838(+) A-I      intronic
chr17:41152825(+) A-I      intronic
chr17:41152668(+) A-I      intronic
chr17:41152713(+) A-I      intronic
chr17:41152708(+) A-I      intronic
chr17:41152646(+) A-I      intronic
chr17:41152946(+) A-I      intronic
chr17:41152556(+) A-I      intronic
chr17:41152974(+) A-I      intronic
chr17:41152643(+) A-I      intronic
chr17:41152951(+) A-I      intronic
chr17:41152924(+) A-I      intronic
chr17:41153942(+) A-I      intronic
chr17:41153961(+) A-I      intronic
chr17:41152723(+) A-I      intronic
chr17:41152945(+) A-I      intronic
chr17:41152885(+) A-I      intronic
chr17:41152817(+) A-I      intronic
chr17:41152913(+) A-I      intronic
chr17:41152816(+) A-I      intronic
chr17:41152800(+) A-I      intronic
chr17:41152886(+) A-I      intronic
chr17:41153987(+) A-I      intronic
chr17:41152735(+) A-I      intronic
chr17:41152584(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RPL27
chr17:41152816(+) A-I intron -    22327324
chr17:41152816(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RPL27
chr17:41150354-41150355(+) m6A 5'UTR       24981863
chr17:41150397-41150398(+) m6A 5'UTR       24981863
chr17:41150656-41150657(+) m6A 5'UTR//exon//intron       22575960
chr17:41150681-41150682(+) m6A 5'UTR//exon//intron       22575960
chr17:41150784-41150785(+) m6A CDS//exon       22575960
chr17:41150833-41150834(+) Gm CDS//exon       -
chr17:41150864-41150865(+) m6A CDS//exon//intron       22575960
chr17:41150887-41150888(+) m6A CDS//exon//intron       22575960
chr17:41150998-41150999(+) m1A exon//intron       26863410
chr17:41151950-41151951(+) m6A 5'UTR//CDS//exon//intron       22575960
chr17:41154712-41154713(+) m6A CDS//exon       27773535
chr17:41154717-41154718(+) m6A CDS//exon       27773535
chr17:41154895-41154896(+) m6A 3'UTR//CDS//exon       27773535
chr17:41154905-41154906(+) m6A 3'UTR//CDS//exon       27773535
chr17:41154924-41154925(+) m6A 3'UTR//CDS//exon       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RPL27
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: RPL27

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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