Detail Information

Basic Information:


  VIRBase ID:  

VHID00056706

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-7 PTPRH
miRBase
Accession/Entrez ID		 zikv-mir-7 5794
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - R-PTP-H//SAP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PTPRH
chr19:55704497(-) A-I      intronic
chr19:55704115(-) A-I      intronic
chr19:55703581(-) A-I      intronic
chr19:55700627(-) A-I      intronic
chr19:55700478(-) A-I      intronic
chr19:55705327(-) A-I      intronic
chr19:55704449(-) A-I      intronic
chr19:55704453(-) A-I      intronic
chr19:55707152(-) A-I      intronic
chr19:55704114(-) A-I      intronic
chr19:55704434(-) A-I      intronic
chr19:55705349(-) A-I      intronic
chr19:55705354(-) A-I      intronic
chr19:55707109(-) A-I      intronic
chr19:55705345(-) A-I      intronic
chr19:55707113(-) A-I      intronic
chr19:55704457(-) A-I      intronic
chr19:55704473(-) A-I      intronic
chr19:55707142(-) A-I      intronic
chr19:55707143(-) A-I      intronic
chr19:55700530(-) A-I      intronic
chr19:55707564(-) A-I      intronic
chr19:55706434(-) A-I      intronic
chr19:55706335(-) A-I      intronic
chr19:55704488(-) A-I      intronic
chr19:55703977(-) A-I      intronic
chr19:55703955(-) A-I      intronic
chr19:55703950(-) A-I      intronic
chr19:55703949(-) A-I      intronic
chr19:55702154(-) A-I      intronic
chr19:55700416(-) A-I      intronic
chr19:55700414(-) A-I      intronic
chr19:55707573(-) A-I      intronic
chr19:55707521(-) A-I      intronic
chr19:55707511(-) A-I      intronic
chr19:55707166(-) A-I      intronic
chr19:55707034(-) A-I      intronic
chr19:55704550(-) A-I      intronic
chr19:55704544(-) A-I      intronic
chr19:55704539(-) A-I      intronic
chr19:55704534(-) A-I      intronic
chr19:55704354(-) A-I      intronic
chr19:55704352(-) A-I      intronic
chr19:55704340(-) A-I      intronic
chr19:55704485(-) A-I      intronic
chr19:55703987(-) A-I      intronic
chr19:55705319(-) A-I      intronic
chr19:55706748(-) A-I      intronic
chr19:55705316(-) A-I      intronic
chr19:55706787(-) A-I      intronic
chr19:55706311(-) A-I      intronic
chr19:55700532(-) A-I      intronic
chr19:55707044(-) A-I      intronic
chr19:55707080(-) A-I      intronic
chr19:55705313(-) A-I      intronic
chr19:55705289(-) A-I      intronic
chr19:55706783(-) A-I      intronic
chr19:55707182(-) A-I      intronic
chr19:55700451(-) A-I      intronic
chr19:55707039(-) A-I      intronic
chr19:55706784(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PTPRH
chr19:55707106(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PTPRH
chr19:55692739-55692740(-) m6A 3'UTR       27773535
chr19:55692780-55692781(-) m6A 3'UTR       27773535
chr19:55692985-55692986(-) m6A 3'UTR       -
chr19:55693024-55693025(-) m6A 3'UTR       -
chr19:55693074-55693075(-) m6A 3'UTR       24981863
chr19:55705529-55705530(-) m6A exon//intron       27773535
chr19:55705561-55705562(-) m6A exon//intron       27773535
chr19:55705586-55705587(-) m6A exon//intron       27773535
chr19:55708566-55708567(-) m6A CDS//exon       24981863//27773535
chr19:55708601-55708602(-) m6A CDS//exon       24981863//27773535
chr19:55708610-55708611(-) m6A CDS//exon       24981863//27773535
chr19:55708656-55708657(-) m6A CDS//exon       24981863//27773535
chr19:55708705-55708706(-) m6A CDS//exon       24981863
chr19:55710214-55710215(-) m6A CDS//exon       27773535
chr19:55710241-55710242(-) m6A CDS//exon       27773535
chr19:55710246-55710247(-) m6A CDS//exon       27773535
chr19:55711678-55711679(-) m6A CDS//exon       27773535
chr19:55711691-55711692(-) m6A CDS//exon       27773535
chr19:55711722-55711723(-) m6A CDS//exon       27773535
chr19:55711729-55711730(-) m6A CDS//exon       27773535
chr19:55711776-55711777(-) m6A CDS//exon       27773535
chr19:55713441-55713442(-) m6A CDS//exon       27773535
chr19:55713505-55713506(-) m6A CDS//exon       27773535
chr19:55713511-55713512(-) m6A CDS//exon       27773535
chr19:55713549-55713550(-) m6A CDS//exon       27773535
chr19:55713596-55713597(-) m6A CDS//exon       27773535
chr19:55713605-55713606(-) m6A CDS//exon       27773535
chr19:55713651-55713652(-) m6A CDS//exon       27773535
chr19:55713671-55713672(-) m6A CDS//exon       27773535
chr19:55715231-55715232(-) m6A CDS//exon//intron       27773535//27773536
chr19:55715259-55715260(-) m6A CDS//exon//intron       27773536
chr19:55715268-55715269(-) m6A CDS//exon//intron       27773536
chr19:55715275-55715276(-) m6A CDS//exon//intron       27773536
chr19:55715281-55715282(-) m6A CDS//exon//intron       27773536
chr19:55715322-55715323(-) m6A CDS//exon//intron       27773535//27773536
chr19:55715331-55715332(-) m6A CDS//exon//intron       27773535//27773536
chr19:55715377-55715378(-) m6A CDS//exon//intron       27773535//27773536
chr19:55715397-55715398(-) m6A CDS//exon//intron       27773535//27773536
chr19:55716711-55716712(-) m6A CDS//exon//intron       27773535//27773536
chr19:55716775-55716776(-) m6A CDS//exon//intron       27773535
chr19:55716781-55716782(-) m6A CDS//exon//intron       27773535
chr19:55716819-55716820(-) m6A CDS//exon//intron       27773535
chr19:55716866-55716867(-) m6A CDS//exon//intron       27773535
chr19:55716875-55716876(-) m6A CDS//exon//intron       27773535
chr19:55718229-55718230(-) m6A CDS//exon       27773535
chr19:55718238-55718239(-) m6A CDS//exon       27773535
chr19:55718284-55718285(-) m6A CDS//exon       27773535
chr19:55718290-55718291(-) m6A CDS//exon       27773535
chr19:55718304-55718305(-) m6A CDS//exon       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PTPRH
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-7
Interactor2: PTPRH

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...