Detail Information

Basic Information:


  VIRBase ID:  

VHID00054671

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-6 LAMA1
miRBase
Accession/Entrez ID		 zikv-mir-6 284217
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - LAMA//PTBHS//S-LAM-alpha

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAMA1
chr18:7013038(-) A-I      intronic
chr18:7012979(-) A-I      intronic
chr18:6990458(-) A-I      intronic
chr18:6990457(-) A-I      intronic
chr18:7004516(-) A-I      intronic
chr18:7004489(-) A-I      intronic
chr18:7004623(-) A-I      intronic
chr18:7004454(-) A-I      intronic
chr18:7004444(-) A-I      intronic
chr18:7004624(-) A-I      intronic
chr18:7005529(-) A-I      intronic
chr18:7005565(-) A-I      intronic
chr18:7004617(-) A-I      intronic
chr18:7005626(-) A-I      intronic
chr18:7005661(-) A-I      intronic
chr18:6997364(-) A-I      intronic
chr18:7018259(-) A-I      intronic
chr18:7018223(-) A-I      intronic
chr18:7018216(-) A-I      intronic
chr18:7059082(-) A-I      intronic
chr18:7104015(-) A-I      intronic
chr18:6988091(-) A-I      intronic
chr18:7057816(-) A-I      intronic
chr18:7015397(-) A-I      intronic
chr18:7075754(-) A-I      intronic
chr18:7088930(-) A-I      intronic
chr18:7005660(-) A-I      intronic
chr18:7018467(-) A-I      intronic
chr18:7112906(-) A-I      intronic
chr18:7084064(-) A-I      intronic
chr18:7004449(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAMA1
chr18:6958634-6958635(-) m6A CDS//exon       -
chr18:6959374-6959375(-) m6A CDS//exon       -
chr18:6959427-6959428(-) m6A CDS//exon       -
chr18:6978271-6978272(-) m6A CDS//exon       24981863
chr18:7015815-7015816(-) m6A CDS//exon       24284625
chr18:7080364-7080365(-) m6A CDS//exon       27773536
chr18:7117744-7117745(-) m6A 5'UTR//exon       27773536
chr18:7117793-7117794(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LAMA1
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-6
Interactor2: LAMA1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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