Detail Information

Basic Information:


  VIRBase ID:  

VHID00053192

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-6 TMA16
miRBase
Accession/Entrez ID		 zikv-mir-6 55319
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - C4orf43

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMA16
chr4:164432779(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMA16
chr4:164415980-164415981(+) m6A exon//intron       24981863//22608085
chr4:164428279-164428280(+) m6A CDS//exon       24981863//27773535
chr4:164435298-164435299(+) m6A CDS//exon       27773535
chr4:164436555-164436556(+) m6A CDS//exon//intron       27773535
chr4:164438548-164438549(+) m6A exon//intron       22608085
chr4:164438594-164438595(+) m6A CDS//exon//intron       24981863//22608085
chr4:164438620-164438621(+) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr4:164438684-164438685(+) m6A 3'UTR//intron       24284625//24209618//24981863//22608085
chr4:164440493-164440494(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr4:164440517-164440518(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr4:164440576-164440577(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr4:164440592-164440593(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085
chr4:164440614-164440615(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMA16
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-6
Interactor2: TMA16

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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