Detail Information

Basic Information:


  VIRBase ID:  

VHID00046953

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-5 TRAPPC4
miRBase
Accession/Entrez ID		 zikv-mir-5 51399
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CGI-104//HSPC172//NEDESBA//PTD009//SBDN//SYNBINDIN//TRS23

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRAPPC4
chr11:118893429(+) A-I      intronic
chr11:118893414(+) A-I      intronic
chr11:118893236(+) A-I      intronic
chr11:118893239(+) A-I      intronic
chr11:118893456(+) A-I      intronic
chr11:118893742(+) A-I      ncRNA
chr11:118893855(+) A-I      ncRNA
chr11:118893804(+) A-I      ncRNA
chr11:118893864(+) A-I      ncRNA
chr11:118893896(+) A-I      ncRNA
chr11:118893897(+) A-I      ncRNA
chr11:118893827(+) A-I      ncRNA
chr11:118893820(+) A-I      ncRNA
chr11:118893904(+) A-I      ncRNA
chr11:118893895(+) A-I      ncRNA
chr11:118893774(+) A-I      ncRNA
chr11:118893884(+) A-I      ncRNA
chr11:118893841(+) A-I      ncRNA
chr11:118893231(+) A-I      intronic
chr11:118893119(+) A-I      intronic
chr11:118893563(+) A-I      intronic
chr11:118892916(+) A-I      intronic
chr11:118893105(+) A-I      intronic
chr11:118892794(+) A-I      intronic
chr11:118893127(+) A-I      intronic
chr11:118893217(+) A-I      intronic
chr11:118893137(+) A-I      intronic
chr11:118893404(+) A-I      intronic
chr11:118893141(+) A-I      intronic
chr11:118893151(+) A-I      intronic
chr11:118892719(+) A-I      intronic
chr11:118893187(+) A-I      intronic
chr11:118893247(+) A-I      intronic
chr11:118893390(+) A-I      intronic
chr11:118893148(+) A-I      intronic
chr11:118893177(+) A-I      intronic
chr11:118893219(+) A-I      intronic
chr11:118893416(+) A-I      intronic
chr11:118893081(+) A-I      intronic
chr11:118893423(+) A-I      intronic
chr11:118893889(+) A-I      ncRNA
chr11:118893755(+) A-I      ncRNA
chr11:118893877(+) A-I      ncRNA
chr11:118893731(+) A-I      ncRNA
chr11:118893909(+) A-I      ncRNA
chr11:118893792(+) A-I      ncRNA
chr11:118893752(+) A-I      ncRNA
chr11:118893814(+) A-I      ncRNA
chr11:118893226(+) A-I      intronic
chr11:118893133(+) A-I      intronic
chr11:118892968(+) A-I      intronic
chr11:118893424(+) A-I      intronic
chr11:118893136(+) A-I      intronic
chr11:118893543(+) A-I      intronic
chr11:118893450(+) A-I      intronic
chr11:118892751(+) A-I      intronic
chr11:118893135(+) A-I      intronic
chr11:118893191(+) A-I      intronic
chr11:118893552(+) A-I      intronic
chr11:118893091(+) A-I      intronic
chr11:118893285(+) A-I      intronic
chr11:118893218(+) A-I      intronic
chr11:118892824(+) A-I      intronic
chr11:118893138(+) A-I      intronic
chr11:118893045(+) A-I      intronic
chr11:118892884(+) A-I      intronic
chr11:118893398(+) A-I      intronic
chr11:118893544(+) A-I      intronic
chr11:118893459(+) A-I      intronic
chr11:118893489(+) A-I      intronic
chr11:118893037(+) A-I      intronic
chr11:118893195(+) A-I      intronic
chr11:118893399(+) A-I      intronic
chr11:118893046(+) A-I      intronic
chr11:118892812(+) A-I      intronic
chr11:118893062(+) A-I      intronic
chr11:118892795(+) A-I      intronic
chr11:118892879(+) A-I      intronic
chr11:118893244(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRAPPC4
chr11:118893091(+) A-G intron -    22484847
chr11:118893195(+) A-G intron -    22484847
chr11:118893792(+) A-G intron -    22484847
chr11:118893814(+) A-G intron -    22484847
chr11:118893909(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRAPPC4
chr11:118889176-118889177(+) m6A 5'UTR       24284625//22608085
chr11:118889533-118889534(+) m6A CDS//exon       24981863//26404942
chr11:118889563-118889564(+) m6A CDS//exon       24981863//26404942//22575960
chr11:118889595-118889596(+) m6A CDS//exon       24981863//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRAPPC4
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-5
Interactor2: TRAPPC4

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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