Detail Information

Basic Information:


  VIRBase ID:  

VHID00044773

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-5 SFPQ
miRBase
Accession/Entrez ID		 zikv-mir-5 6421
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - POMP100//PPP1R140//PSF

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SFPQ
chr1:35654238(-) A-I      intronic
chr1:35649050(-) A-I      3'UTR
chr1:35655617(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SFPQ
chr1:35655378(-) G-A intron -    22484847
chr1:35655617(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SFPQ
chr1:35642047-35642048(-) m6A 3'UTR//exon       24981863//28052920//27773535//27371828
chr1:35642836-35642837(-) m6A exon//intron       24981863//28052920//27773535//27371828
chr1:35642890-35642891(-) m6A exon//intron       24981863//27773535//27371828
chr1:35642935-35642936(-) m6A 3'UTR//exon       27773535
chr1:35642979-35642980(-) m6A 3'UTR//exon       27773535
chr1:35643889-35643890(-) m6A exon//intron       27773535
chr1:35643898-35643899(-) m6A exon//intron       27773535
chr1:35643910-35643911(-) m6A exon//intron       27773535
chr1:35644132-35644133(-) m6A exon//intron       -
chr1:35644174-35644175(-) m6A exon//intron       -
chr1:35644185-35644186(-) m6A exon//intron       -
chr1:35647042-35647043(-) m6A exon//intron       26404942
chr1:35647083-35647084(-) m6A exon//intron       26404942
chr1:35647103-35647104(-) m6A exon//intron       26404942
chr1:35647110-35647111(-) m6A exon//intron       26404942
chr1:35649453-35649454(-) m6A 3'UTR//intron       26404942
chr1:35649694-35649695(-) Y 3'UTR//intron       25219674
chr1:35650068-35650069(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22575960
chr1:35650075-35650076(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22575960
chr1:35650102-35650103(-) Gm CDS//intron       -
chr1:35650121-35650122(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22575960
chr1:35650149-35650150(-) m6A CDS//intron       24284625//24981863//26404942//27773535//22575960
chr1:35652811-35652812(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:35652841-35652842(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr1:35653627-35653628(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr1:35653638-35653639(-) Gm CDS       -
chr1:35654647-35654648(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:35654811-35654812(-) m6A CDS       24981863//27773535//27371828//22575960
chr1:35654848-35654849(-) m6A CDS       24981863//27773535//27371828//22575960
chr1:35654866-35654867(-) m6A CDS       24981863//27773535//27371828//22575960
chr1:35654880-35654881(-) m6A CDS       24981863//27773535//22575960
chr1:35654892-35654893(-) m6A CDS       24981863//27773535//22575960
chr1:35654972-35654973(-) m6A CDS       24981863//27773535//22575960
chr1:35656127-35656128(-) m6A CDS       27773535
chr1:35656155-35656156(-) Tm CDS       -
chr1:35656160-35656161(-) m6A CDS       27773535
chr1:35656169-35656170(-) m6A CDS       27773535
chr1:35656458-35656459(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//22575960//22608085
chr1:35656533-35656534(-) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr1:35656560-35656561(-) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr1:35656992-35656993(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr1:35657013-35657014(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr1:35657084-35657085(-) m6A CDS       24209618//24981863//26404942//27773535//27371828
chr1:35657829-35657830(-) m6A CDS       24209618//27773535//27371828//22575960
chr1:35658308-35658309(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960
chr1:35658336-35658337(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960
chr1:35658651-35658652(-) m6A 5'UTR       24284625//24981863//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SFPQ
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-5
Interactor2: SFPQ

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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