Detail Information

Basic Information:


  VIRBase ID:  

VHID00039943

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 CEP290
miRBase
Accession/Entrez ID		 zikv-mir-4 80184
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - 3H11Ag//BBS14//CT87//JBTS5//LCA10//MKS4//NPHP6//POC3//rd16//SLSN6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CEP290
chr12:88443339(-) A-I      intronic
chr12:88443365(-) A-I      intronic
chr12:88443372(-) A-I      intronic
chr12:88443373(-) A-I      intronic
chr12:88443334(-) A-I      intronic
chr12:88443304(-) A-I      intronic
chr12:88443312(-) A-I      intronic
chr12:88443327(-) A-I      intronic
chr12:88443333(-) A-I      intronic
chr12:88443338(-) A-I      intronic
chr12:88484295(-) A-I      intronic
chr12:88483641(-) A-I      intronic
chr12:88454172(-) A-I      intronic
chr12:88484179(-) A-I      intronic
chr12:88525191(-) A-I      intronic
chr12:88513393(-) A-I      intronic
chr12:88500844(-) A-I      NonSyn:Thr->Ala
chr12:88489898(-) A-I      intronic
chr12:88454303(-) A-I      intronic
chr12:88454224(-) A-I      intronic
chr12:88454169(-) A-I      intronic
chr12:88526955(-) A-I      intronic
chr12:88484299(-) A-I      intronic
chr12:88454188(-) A-I      intronic
chr12:88454214(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CEP290
chr12:88500844(-) A-I exon CDS    22327324
chr12:88526995(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CEP290
chr12:88442878-88442879(-) m6A 3'UTR       27773535
chr12:88442946-88442947(-) m6A 3'UTR       27773535
chr12:88443050-88443051(-) m6A CDS       24981863//27773535//22608085
chr12:88443059-88443060(-) m6A CDS       24981863//27773535//22608085
chr12:88443164-88443165(-) m6A CDS       24981863//27773535//22608085
chr12:88444171-88444172(-) m6A CDS       27773535//22608085
chr12:88447457-88447458(-) m6A CDS       27773535
chr12:88448153-88448154(-) m6A CDS       24981863//27773535
chr12:88448175-88448176(-) m6A CDS       24981863//27773535
chr12:88449358-88449359(-) m6A CDS       24981863//27773535
chr12:88449365-88449366(-) m6A CDS       24981863//27773535
chr12:88449391-88449392(-) m6A CDS       24981863//27773535
chr12:88449421-88449422(-) m6A CDS       27773535
chr12:88449462-88449463(-) m6A CDS       27773535
chr12:88449483-88449484(-) m6A CDS       27773535
chr12:88452712-88452713(-) m6A CDS       24981863//27773535
chr12:88452793-88452794(-) m6A CDS       24981863//27773535
chr12:88453683-88453684(-) m6A CDS       24981863//27773535
chr12:88453733-88453734(-) m6A CDS       24981863//27773535
chr12:88453782-88453783(-) m6A CDS       24981863//27773535
chr12:88454681-88454682(-) m6A CDS       24981863//27773535
chr12:88454731-88454732(-) m6A CDS       24981863//27773535
chr12:88454741-88454742(-) m6A CDS       24981863//27773535
chr12:88454752-88454753(-) m6A CDS       24981863//27773535
chr12:88456486-88456487(-) m6A CDS       27773535
chr12:88457787-88457788(-) m6A CDS       27773535
chr12:88457805-88457806(-) m6A CDS       27773535
chr12:88457833-88457834(-) m6A CDS       27773535
chr12:88457853-88457854(-) m6A CDS       27773535
chr12:88462331-88462332(-) m6A CDS       27773535
chr12:88462349-88462350(-) m6A CDS       27773535
chr12:88465185-88465186(-) m6A CDS       27773535
chr12:88465192-88465193(-) m6A CDS       27773535
chr12:88465210-88465211(-) m6A CDS       27773535
chr12:88465632-88465633(-) m6A CDS       24981863//27773535//22608085
chr12:88471013-88471014(-) m6A CDS       24981863//27773535//22608085
chr12:88471020-88471021(-) m6A CDS       24981863//27773535//22608085
chr12:88471050-88471051(-) m6A CDS       24981863//27773535//22608085
chr12:88471058-88471059(-) m6A CDS       24981863//27773535//22608085
chr12:88471079-88471080(-) m6A CDS       24981863//27773535//22608085
chr12:88471097-88471098(-) m6A CDS       24981863//27773535//22608085
chr12:88471115-88471116(-) m6A CDS       24981863//27773535//22608085
chr12:88471491-88471492(-) m6A CDS       24981863//27773535//22608085
chr12:88471512-88471513(-) m6A CDS       24981863//27773535//22608085
chr12:88471572-88471573(-) m6A CDS       24981863//27773535//22608085
chr12:88471584-88471585(-) m6A CDS       24981863//27773535//22608085
chr12:88471621-88471622(-) m6A CDS       24981863//27773535//22608085
chr12:88471630-88471631(-) m6A CDS       24981863//27773535//22608085
chr12:88471640-88471641(-) m6A CDS       27773535//22608085
chr12:88471664-88471665(-) Y CDS       26075521
chr12:88472982-88472983(-) m6A CDS       27773535
chr12:88473967-88473968(-) m6A CDS       27773535
chr12:88474063-88474064(-) m6A CDS       27773535
chr12:88474160-88474161(-) m6A CDS       24981863
chr12:88476860-88476861(-) m6A CDS       24981863
chr12:88476890-88476891(-) m6A CDS       24981863
chr12:88477687-88477688(-) Y CDS       26075521
chr12:88477707-88477708(-) m6A CDS       24981863
chr12:88478435-88478436(-) m6A CDS       24981863//27773535
chr12:88478445-88478446(-) m6A CDS       24981863//27773535
chr12:88478482-88478483(-) m6A CDS       24981863//27773535
chr12:88478554-88478555(-) m6A CDS       24981863//27773535//22608085
chr12:88478570-88478571(-) m6A CDS       24981863//27773535//22608085
chr12:88478590-88478591(-) m6A CDS       24981863//27773535//22608085
chr12:88478626-88478627(-) m6A CDS       24981863//27773535//22608085
chr12:88479844-88479845(-) m6A CDS       24981863//27773535//22608085
chr12:88479864-88479865(-) m6A CDS       24981863//27773535
chr12:88481670-88481671(-) m6A CDS       27773535//22608085
chr12:88481676-88481677(-) m6A CDS       27773535//22608085
chr12:88481691-88481692(-) m6A CDS       27773535//22608085
chr12:88482885-88482886(-) m6A CDS       27773535//22608085
chr12:88482890-88482891(-) m6A CDS       27773535//22608085
chr12:88482907-88482908(-) m6A CDS       27773535//22608085
chr12:88482946-88482947(-) m6A CDS       24981863//27773535//22608085
chr12:88482972-88482973(-) m6A CDS       24981863//27773535//22608085
chr12:88483041-88483042(-) m6A CDS       27773535//22608085
chr12:88483054-88483055(-) m6A CDS       27773535//22608085
chr12:88483064-88483065(-) m6A CDS       27773535//22608085
chr12:88483099-88483100(-) m6A CDS       22608085
chr12:88483114-88483115(-) m6A CDS       22608085
chr12:88486477-88486478(-) m6A CDS       24981863//27773535
chr12:88486573-88486574(-) m6A CDS       24981863//27773535
chr12:88487633-88487634(-) m6A CDS       27773535
chr12:88490673-88490674(-) m6A CDS       27773535
chr12:88490680-88490681(-) m6A CDS       27773535
chr12:88490752-88490753(-) m6A CDS       24981863
chr12:88490768-88490769(-) m6A CDS       24981863
chr12:88496623-88496624(-) m6A CDS       24981863
chr12:88496637-88496638(-) m6A CDS       24981863
chr12:88500820-88500821(-) m6A CDS       24981863//27773535
chr12:88500843-88500844(-) m6A CDS       24981863//27773535
chr12:88500855-88500856(-) m6A CDS       24981863//27773535
chr12:88500864-88500865(-) m6A CDS       24981863//27773535
chr12:88505106-88505107(-) m6A 3'UTR//CDS       27773535
chr12:88505123-88505124(-) m6A 3'UTR//CDS       27773535
chr12:88505539-88505540(-) m6A 3'UTR//CDS       27773535
chr12:88508205-88508206(-) m6A CDS//intron       27773535
chr12:88508901-88508902(-) m6A CDS       27773535
chr12:88508938-88508939(-) m6A CDS       27773535
chr12:88509257-88509258(-) m6A CDS//intron       27773535
chr12:88510888-88510889(-) m6A CDS       24981863//27773535
chr12:88510900-88510901(-) m6A CDS       24981863//27773535
chr12:88510906-88510907(-) m6A CDS       24981863//27773535
chr12:88512461-88512462(-) m6A CDS       24981863
chr12:88512470-88512471(-) m6A CDS       24981863//27773535
chr12:88512505-88512506(-) m6A CDS       24981863//27773535
chr12:88512512-88512513(-) m6A CDS       24981863//27773535
chr12:88513948-88513949(-) m6A CDS       27773535
chr12:88514003-88514004(-) m6A CDS       24981863//27773535
chr12:88514848-88514849(-) m6A CDS       24981863//27773535
chr12:88514856-88514857(-) m6A CDS       24981863//27773535
chr12:88514874-88514875(-) m6A CDS       24981863//27773535
chr12:88514891-88514892(-) m6A CDS       24981863//27773535
chr12:88519129-88519130(-) m6A CDS       27773535
chr12:88520146-88520147(-) m6A CDS       27773535
chr12:88523523-88523524(-) m6A CDS       24981863
chr12:88524078-88524079(-) m6A CDS       24981863//27773535//22608085
chr12:88524111-88524112(-) m6A CDS       24981863//27773535//22608085
chr12:88524136-88524137(-) m6A CDS       24981863//27773535//22608085
chr12:88524158-88524159(-) m6A CDS       24981863//27773535//22608085
chr12:88524191-88524192(-) m6A CDS       24981863//27773535//22608085
chr12:88524960-88524961(-) m6A CDS//intron       24981863//27773535//22608085
chr12:88529488-88529489(-) m6A 3'UTR//intron       27773535//22608085
chr12:88530462-88530463(-) m6A CDS       24981863//27773535//22608085
chr12:88530485-88530486(-) m6A CDS       24981863//27773535//22608085
chr12:88530494-88530495(-) m6A CDS       24981863//27773535//22608085
chr12:88532927-88532928(-) m6A CDS       24981863//27773535//22608085
chr12:88532939-88532940(-) m6A CDS       24981863//27773535//22608085
chr12:88532953-88532954(-) m6A CDS       24981863//27773535//22608085
chr12:88533284-88533285(-) m6A CDS       27773535
chr12:88535767-88535768(-) m6A 5'UTR       24981863
chr12:88535785-88535786(-) m6A 5'UTR       24981863
chr12:88535798-88535799(-) m6A 5'UTR       24981863
chr12:88535894-88535895(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CEP290
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: CEP290

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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