Detail Information

Basic Information:


  VIRBase ID:  

VHID00039674

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 DHX58
miRBase
Accession/Entrez ID		 zikv-mir-4 79132
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - D11LGP2//D11lgp2e//LGP2//RLR-3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DHX58
chr17:40256119(-) A-I      intronic
chr17:40255025(-) A-I      intronic
chr17:40256117(-) A-I      intronic
chr17:40256179(-) A-I      intronic
chr17:40256210(-) A-I      intronic
chr17:40258816(-) A-I      intronic
chr17:40254939(-) A-I      intronic
chr17:40254930(-) A-I      intronic
chr17:40255987(-) A-I      intronic
chr17:40255998(-) A-I      intronic
chr17:40255072(-) A-I      intronic
chr17:40258631(-) A-I      intronic
chr17:40255101(-) A-I      intronic
chr17:40254966(-) A-I      intronic
chr17:40256158(-) A-I      intronic
chr17:40254917(-) A-I      intronic
chr17:40254904(-) A-I      intronic
chr17:40254975(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DHX58
chr17:40253673(-) A-C exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DHX58
chr17:40253537-40253538(-) m6A 3'UTR       28052920//27773535
chr17:40253570-40253571(-) m6A 3'UTR       28052920//27773535
chr17:40253591-40253592(-) m6A 3'UTR       28052920//27773535
chr17:40253619-40253620(-) m6A 3'UTR//exon       27773535
chr17:40253719-40253720(-) m6A 3'UTR//exon       27371828
chr17:40253782-40253783(-) m6A 3'UTR//CDS//exon       27371828
chr17:40253794-40253795(-) m6A 3'UTR//CDS//exon       27371828
chr17:40253803-40253804(-) m6A 3'UTR//CDS//exon       27371828
chr17:40253891-40253892(-) m6A 3'UTR//CDS//exon       27371828
chr17:40254243-40254244(-) m6A 3'UTR//CDS//exon       -
chr17:40254276-40254277(-) m6A 3'UTR//CDS//exon       -
chr17:40254327-40254328(-) m6A CDS//exon       -
chr17:40254407-40254408(-) m6A exon//intron       -
chr17:40254485-40254486(-) m6A exon//intron       27773535
chr17:40254528-40254529(-) m6A exon//intron       27773535
chr17:40254554-40254555(-) m6A exon//intron       27773535
chr17:40254563-40254564(-) m6A exon//intron       27773535
chr17:40254575-40254576(-) m6A exon//intron       27773535
chr17:40254667-40254668(-) m6A exon//intron       27773535
chr17:40255754-40255755(-) m6A CDS//exon//intron       27371828
chr17:40256805-40256806(-) m6A CDS//exon       27371828
chr17:40257138-40257139(-) m6A CDS//exon       27371828
chr17:40257145-40257146(-) m6A CDS//exon       27371828
chr17:40257180-40257181(-) m6A CDS//exon       27371828
chr17:40257781-40257782(-) m6A CDS//exon//intron       27371828
chr17:40257814-40257815(-) m6A CDS//exon//intron       27371828
chr17:40257821-40257822(-) m6A CDS//exon//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DHX58
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: DHX58

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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