Detail Information

Basic Information:


  VIRBase ID:  

VHID00039528

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 ATG3
miRBase
Accession/Entrez ID		 zikv-mir-4 64422
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - APG3//APG3-LIKE//APG3L//PC3-96

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ATG3
chr3:112276093(-) A-I      intronic
chr3:112276133(-) A-I      intronic
chr3:112276316(-) A-I      intronic
chr3:112276378(-) A-I      intronic
chr3:112276075(-) A-I      intronic
chr3:112276343(-) A-I      intronic
chr3:112276356(-) A-I      intronic
chr3:112276017(-) A-I      intronic
chr3:112276020(-) A-I      intronic
chr3:112276285(-) A-I      intronic
chr3:112276226(-) A-I      intronic
chr3:112276082(-) A-I      intronic
chr3:112276317(-) A-I      intronic
chr3:112271674(-) A-I      intronic
chr3:112276299(-) A-I      intronic
chr3:112276302(-) A-I      intronic
chr3:112255646(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ATG3
chr3:112276285(-) A-G intron -    22484847
chr3:112276299(-) A-G intron -    22484847
chr3:112276317(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ATG3
chr3:112256613-112256614(-) m6A 3'UTR//CDS//exon       27773535
chr3:112256652-112256653(-) m6A 3'UTR//CDS//exon       27773535
chr3:112256658-112256659(-) m6A 3'UTR//CDS//exon       27773535
chr3:112256691-112256692(-) m6A 3'UTR//CDS//exon       27773535
chr3:112257000-112257001(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr3:112257060-112257061(-) m6A exon//intron       24981863//27773535
chr3:112257066-112257067(-) m6A exon//intron       24981863//27773535
chr3:112257127-112257128(-) m6A exon//intron       24981863//27773535
chr3:112257138-112257139(-) m6A exon//intron       24981863//27773535
chr3:112267464-112267465(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535
chr3:112269060-112269061(-) m6A 5'UTR//CDS//exon//intron       24981863//27773535
chr3:112280453-112280454(-) m6A 5'UTR//exon//intron       25456834//24981863//27773536
chr3:112280716-112280717(-) m6A 5'UTR//exon       24284625//25456834//24981863//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ATG3
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: ATG3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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