Detail Information

Basic Information:


  VIRBase ID:  

VHID00039515

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 ZMAT3
miRBase
Accession/Entrez ID		 zikv-mir-4 64393
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - PAG608//WIG-1//WIG1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZMAT3
chr3:178748281(-) A-I      intronic
chr3:178748303(-) A-I      intronic
chr3:178748370(-) A-I      intronic
chr3:178749576(-) A-I      intronic
chr3:178749657(-) A-I      intronic
chr3:178782333(-) A-I      intronic
chr3:178782438(-) A-I      intronic
chr3:178782514(-) A-I      intronic
chr3:178746785(-) A-I      intronic
chr3:178746826(-) A-I      intronic
chr3:178746908(-) A-I      intronic
chr3:178782498(-) A-I      intronic
chr3:178782315(-) A-I      intronic
chr3:178749529(-) A-I      intronic
chr3:178749503(-) A-I      intronic
chr3:178782320(-) A-I      intronic
chr3:178748319(-) A-I      intronic
chr3:178749515(-) A-I      intronic
chr3:178749573(-) A-I      intronic
chr3:178748414(-) A-I      intronic
chr3:178749583(-) A-I      intronic
chr3:178744351(-) A-I      intronic
chr3:178762265(-) A-I      intronic
chr3:178783601(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZMAT3
chr3:178740951(-) G-A exon 3'UTR    22484847
chr3:178744455(-) G-C intron -    22484847
chr3:178748414(-) A-G intron -    22484847
chr3:178749503(-) A-G intron -    22484847
chr3:178749515(-) A-G intron -    22484847
chr3:178749529(-) A-G intron -    22484847
chr3:178749573(-) A-G intron -    22484847
chr3:178749583(-) A-G intron -    22484847
chr3:178765486(-) G-T intron -    22484847
chr3:178778367(-) T-C intron -    22484847
chr3:178782498(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZMAT3
chr3:178738549-178738550(-) m6A 3'UTR       -
chr3:178738614-178738615(-) m6A 3'UTR       -
chr3:178742341-178742342(-) m6A 3'UTR       -
chr3:178748766-178748767(-) m6A CDS       24981863//27773535//22608085
chr3:178785301-178785302(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr3:178785321-178785322(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr3:178785361-178785362(-) m6A CDS       24284625//24981863//28052920//27773535//22575960//22608085
chr3:178785388-178785389(-) m1A CDS       26863196
chr3:178785452-178785453(-) m6A CDS       24284625//24981863//22575960
chr3:178785588-178785589(-) m6A 5'UTR       -
chr3:178789557-178789558(-) m6A 5'UTR       25456834//24981863//27371828
chr3:178789819-178789820(-) m6A 5'UTR       27371828
chr3:178789857-178789858(-) m6A 5'UTR       27371828
chr3:178789948-178789949(-) m6A 5'UTR       24981863//27371828
chr3:178789957-178789958(-) m6A 5'UTR       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZMAT3
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: ZMAT3

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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