Detail Information

Basic Information:


  VIRBase ID:  

VHID00037906

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 DBNL
miRBase
Accession/Entrez ID		 zikv-mir-4 28988
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - ABP1//HIP-55//HIP55//SH3P7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DBNL
chr7:44094946(+) A-I      intronic
chr7:44094888(+) A-I      intronic
chr7:44094924(+) A-I      intronic
chr7:44093813(+) A-I      intronic
chr7:44094858(+) A-I      intronic
chr7:44094809(+) A-I      intronic
chr7:44093866(+) A-I      intronic
chr7:44094831(+) A-I      intronic
chr7:44093853(+) A-I      intronic
chr7:44095052(+) A-I      intronic
chr7:44094801(+) A-I      intronic
chr7:44093975(+) A-I      intronic
chr7:44092088(+) A-I      intronic
chr7:44088986(+) A-I      intronic
chr7:44092116(+) A-I      intronic
chr7:44094027(+) A-I      intronic
chr7:44091959(+) A-I      intronic
chr7:44094864(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DBNL
chr7:44088619(+) G-A intron -    22484847
chr7:44093866(+) A-G intron -    22484847
chr7:44093921(+) A-G intron -    22484847
chr7:44093931(+) A-G intron -    22484847
chr7:44093975(+) A-G intron -    22484847
chr7:44094001(+) A-G intron -    22484847
chr7:44094027(+) A-G intron -    22484847
chr7:44094801(+) A-G intron -    22484847
chr7:44094831(+) A-G intron -    22484847
chr7:44094864(+) A-G intron -    22484847
chr7:44094947(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DBNL
chr7:44084321-44084322(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr7:44084346-44084347(+) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085
chr7:44089516-44089517(+) m6A exon//intron       24284625//24981863
chr7:44089780-44089781(+) m6A exon//intron       24209618
chr7:44089899-44089900(+) m6A exon//intron       24209618//24981863
chr7:44089907-44089908(+) m6A exon//intron       24209618//24981863
chr7:44091369-44091370(+) m6A exon//intron       -
chr7:44091500-44091501(+) m6A 3'UTR//CDS//exon//intron       24209618
chr7:44091513-44091514(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618
chr7:44096486-44096487(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//22575960
chr7:44097398-44097399(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960
chr7:44097435-44097436(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960
chr7:44097656-44097657(+) m6A 3'UTR//exon//intron       24209618
chr7:44097740-44097741(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:44098065-44098066(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960
chr7:44098107-44098108(+) m6A exon//intron       24284625//24209618//24981863//22575960
chr7:44098162-44098163(+) m6A exon//intron       24284625//24209618
chr7:44098999-44099000(+) m6A 3'UTR//CDS//exon//intron       24284625
chr7:44100408-44100409(+) m6A 3'UTR//CDS//exon       -
chr7:44100548-44100549(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085
chr7:44100592-44100593(+) Y 3'UTR//exon       26075521
chr7:44100615-44100616(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22575960//22608085
chr7:44100660-44100661(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22575960//22608085
chr7:44100737-44100738(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085
chr7:44101140-44101141(+) m6A 3'UTR//exon       24284625
chr7:44101291-44101292(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr7:44101307-44101308(+) m6A 3'UTR//exon       24284625//24981863//22608085
chr7:44105052-44105053(+) m6A 3'UTR       24981863
chr7:44105102-44105103(+) m6A 3'UTR       24981863
chr7:44105141-44105142(+) m6A 3'UTR       24981863
chr7:44105151-44105152(+) m6A 3'UTR       24981863
chr7:44105638-44105639(+) m6A 3'UTR       -
chr7:44105896-44105897(+) m6A 3'UTR       -
chr7:44105903-44105904(+) m6A 3'UTR       -
chr7:44105949-44105950(+) m6A 3'UTR       -
chr7:44105992-44105993(+) m6A 3'UTR       -
chr7:44105998-44105999(+) m6A 3'UTR       -
chr7:44106047-44106048(+) m6A 3'UTR       24981863
chr7:44106099-44106100(+) m6A 3'UTR       24209618
chr7:44106214-44106215(+) m6A 3'UTR       -
chr7:44106228-44106229(+) m6A 3'UTR       -
chr7:44106251-44106252(+) m6A 3'UTR       -
chr7:44106543-44106544(+) m6A 3'UTR       -
chr7:44106573-44106574(+) m6A 3'UTR       -
chr7:44106620-44106621(+) m6A 3'UTR       -
chr7:44106661-44106662(+) m6A 3'UTR       24981863
chr7:44106702-44106703(+) m6A 3'UTR       24981863
chr7:44106803-44106804(+) m6A 3'UTR       24981863
chr7:44107053-44107054(+) m6A 3'UTR       -
chr7:44107062-44107063(+) m6A 3'UTR       -
chr7:44107123-44107124(+) m6A 3'UTR       -
chr7:44108026-44108027(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108047-44108048(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108069-44108070(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108078-44108079(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108105-44108106(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108173-44108174(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108261-44108262(+) m6A 3'UTR       24284625//24981863//22608085
chr7:44108317-44108318(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108380-44108381(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108388-44108389(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108405-44108406(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108447-44108448(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108462-44108463(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108472-44108473(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108479-44108480(+) m6A 3'UTR       24284625//24981863//27773535//22608085
chr7:44108531-44108532(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:44108546-44108547(+) m6A 3'UTR       24209618//24981863//22608085
chr7:44108564-44108565(+) m6A 3'UTR       24209618//24981863//22608085
chr7:44108589-44108590(+) m6A 3'UTR       24981863//22608085
chr7:44108677-44108678(+) m6A 3'UTR       24981863//22608085
chr7:44108743-44108744(+) m6A 3'UTR       24981863//22608085
chr7:44108757-44108758(+) m6A 3'UTR       24981863//22608085
chr7:44108786-44108787(+) m6A 3'UTR       24981863//22608085
chr7:44108806-44108807(+) m6A 3'UTR       24981863//22608085
chr7:44108841-44108842(+) m6A 3'UTR       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DBNL
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: DBNL

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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