Detail Information

Basic Information:


  VIRBase ID:  

VHID00037463

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 MMD
miRBase
Accession/Entrez ID		 zikv-mir-4 23531
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - MMA//MMD1//PAQR11

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MMD
chr17:53483893(-) A-I      intronic
chr17:53475134(-) A-I      intronic
chr17:53486222(-) A-I      intronic
chr17:53477833(-) A-I      intronic
chr17:53474601(-) A-I      intronic
chr17:53482729(-) A-I      intronic
chr17:53477847(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MMD
chr17:53471027-53471028(-) m6A 3'UTR       27773535
chr17:53471042-53471043(-) m6A 3'UTR       27773535
chr17:53471103-53471104(-) m6A 3'UTR       27773535
chr17:53471213-53471214(-) m6A 3'UTR       27773535
chr17:53471426-53471427(-) m6A 3'UTR       24981863
chr17:53471431-53471432(-) m6A 3'UTR       24981863
chr17:53471454-53471455(-) m6A 3'UTR       24981863
chr17:53471465-53471466(-) m6A 3'UTR       24981863
chr17:53497667-53497668(-) m6A exon//intron       24209618//27371828//22608085
chr17:53497670-53497671(-) Am exon//intron       -
chr17:53497687-53497688(-) m6A exon//intron       24209618//22608085
chr17:53497709-53497710(-) m6A exon//intron       24209618//24981863//22608085
chr17:53497742-53497743(-) m6A exon//intron       24209618//24981863//22608085
chr17:53497814-53497815(-) m6A exon//intron       27773536//22608085
chr17:53499161-53499162(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MMD
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: MMD

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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