Detail Information

Basic Information:


  VIRBase ID:  

VHID00035993

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 PRC1
miRBase
Accession/Entrez ID		 zikv-mir-4 9055
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - ASE1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRC1
chr15:91515909(-) A-I      intronic
chr15:91514613(-) A-I      intronic
chr15:91514640(-) A-I      intronic
chr15:91521089(-) A-I      intronic
chr15:91529770(-) A-I      intronic
chr15:91529824(-) A-I      intronic
chr15:91529830(-) A-I      intronic
chr15:91533325(-) A-I      intronic
chr15:91533381(-) A-I      intronic
chr15:91534133(-) A-I      intronic
chr15:91534173(-) A-I      intronic
chr15:91534188(-) A-I      intronic
chr15:91534296(-) A-I      intronic
chr15:91534480(-) A-I      intronic
chr15:91534524(-) A-I      intronic
chr15:91534522(-) A-I      intronic
chr15:91534546(-) A-I      intronic
chr15:91534616(-) A-I      intronic
chr15:91528926(-) A-I      intronic
chr15:91520981(-) A-I      intronic
chr15:91521017(-) A-I      intronic
chr15:91521042(-) A-I      intronic
chr15:91521058(-) A-I      intronic
chr15:91528903(-) A-I      intronic
chr15:91528965(-) A-I      intronic
chr15:91529117(-) A-I      intronic
chr15:91529185(-) A-I      intronic
chr15:91529204(-) A-I      intronic
chr15:91529710(-) A-I      intronic
chr15:91529730(-) A-I      intronic
chr15:91527632(-) A-I      intronic
chr15:91527635(-) A-I      intronic
chr15:91527548(-) A-I      intronic
chr15:91529687(-) A-I      intronic
chr15:91527677(-) A-I      intronic
chr15:91527641(-) A-I      intronic
chr15:91527583(-) A-I      intronic
chr15:91534191(-) A-I      intronic
chr15:91527672(-) A-I      intronic
chr15:91527678(-) A-I      intronic
chr15:91527636(-) A-I      intronic
chr15:91527623(-) A-I      intronic
chr15:91529752(-) A-I      intronic
chr15:91527686(-) A-I      intronic
chr15:91529213(-) A-I      intronic
chr15:91515594(-) A-I      intronic
chr15:91534502(-) A-I      intronic
chr15:91521088(-) A-I      intronic
chr15:91521097(-) A-I      intronic
chr15:91534186(-) A-I      intronic
chr15:91529769(-) A-I      intronic
chr15:91534187(-) A-I      intronic
chr15:91514974(-) A-I      intronic
chr15:91534611(-) A-I      intronic
chr15:91530435(-) A-I      intronic
chr15:91529832(-) A-I      intronic
chr15:91520178(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRC1
chr15:91527548(-) A-I intron -    22028664
chr15:91527583(-) A-I intron -    22028664
chr15:91527623(-) A-I intron -    22028664
chr15:91527632(-) A-I intron -    22028664
chr15:91527635(-) A-I intron -    22028664
chr15:91527636(-) A-I intron -    22028664
chr15:91527641(-) A-I intron -    22028664
chr15:91527672(-) A-I intron -    22028664
chr15:91527677(-) A-I intron -    22028664
chr15:91527678(-) A-I intron -    22028664
chr15:91527686(-) A-I intron -    22028664

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRC1
chr15:91509557-91509558(-) m6A 3'UTR       27773535
chr15:91509722-91509723(-) m6A 3'UTR       27773535
chr15:91513739-91513740(-) m6A CDS//intron       27773535
chr15:91517248-91517249(-) m6A exon//intron       27773535
chr15:91517343-91517344(-) m6A exon//intron       24981863//27773535//27371828
chr15:91517360-91517361(-) m6A exon//intron       24981863//27773535//27371828
chr15:91517398-91517399(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr15:91517418-91517419(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr15:91517448-91517449(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr15:91517458-91517459(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828
chr15:91517465-91517466(-) m6A CDS//exon       24981863//28052920//26404942//27773535//27371828
chr15:91517862-91517863(-) m6A CDS//exon       24981863//28052920//27773535//27371828
chr15:91517916-91517917(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960
chr15:91517922-91517923(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960
chr15:91519938-91519939(-) m6A CDS//exon       24981863//27773535//27371828
chr15:91519969-91519970(-) m6A CDS//exon       24981863//27773535//27371828
chr15:91522444-91522445(-) m6A CDS//exon       22575960
chr15:91522466-91522467(-) m6A CDS//exon       22575960
chr15:91524192-91524193(-) m6A CDS//exon       22575960
chr15:91524982-91524983(-) m6A CDS//exon       24981863//27371828//22608085
chr15:91525017-91525018(-) m6A CDS//exon       24981863//27371828//22608085
chr15:91525088-91525089(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr15:91525118-91525119(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr15:91525124-91525125(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr15:91525142-91525143(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22575960//22608085
chr15:91527965-91527966(-) m6A CDS//exon//intron       22575960
chr15:91537672-91537673(-) m6A 5'UTR//exon       22575960
chr15:91537678-91537679(-) m6A 5'UTR//exon       22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PRC1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: PRC1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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