Detail Information

Basic Information:


  VIRBase ID:  

VHID00035096

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 SDHB
miRBase
Accession/Entrez ID		 zikv-mir-4 6390
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CWS2//IP//MC2DN4//PGL4//SDH//SDH1//SDH2//SDHIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SDHB
chr1:17360788(-) A-I      intronic
chr1:17371040(-) A-I      intronic
chr1:17360816(-) A-I      intronic
chr1:17367185(-) A-I      intronic
chr1:17371058(-) A-I      intronic
chr1:17376291(-) A-I      intronic
chr1:17370996(-) A-I      intronic
chr1:17376335(-) A-I      intronic
chr1:17376278(-) A-I      intronic
chr1:17360807(-) A-I      intronic
chr1:17370998(-) A-I      intronic
chr1:17360774(-) A-I      intronic
chr1:17360754(-) A-I      intronic
chr1:17376304(-) A-I      intronic
chr1:17376317(-) A-I      intronic
chr1:17371024(-) A-I      intronic
chr1:17370993(-) A-I      intronic
chr1:17367178(-) A-I      intronic
chr1:17367057(-) A-I      intronic
chr1:17369605(-) A-I      intronic
chr1:17376422(-) A-I      intronic
chr1:17362227(-) A-I      intronic
chr1:17362211(-) A-I      intronic
chr1:17346445(-) A-I      intronic
chr1:17362176(-) A-I      intronic
chr1:17346435(-) A-I      intronic
chr1:17374066(-) A-I      intronic
chr1:17361020(-) A-I      intronic
chr1:17373341(-) A-I      intronic
chr1:17361014(-) A-I      intronic
chr1:17361013(-) A-I      intronic
chr1:17367240(-) A-I      intronic
chr1:17361004(-) A-I      intronic
chr1:17346376(-) A-I      intronic
chr1:17362908(-) A-I      intronic
chr1:17373280(-) A-I      intronic
chr1:17367214(-) A-I      intronic
chr1:17362188(-) A-I      intronic
chr1:17367196(-) A-I      intronic
chr1:17376330(-) A-I      intronic
chr1:17360961(-) A-I      intronic
chr1:17369056(-) A-I      intronic
chr1:17362269(-) A-I      intronic
chr1:17378615(-) A-I      intronic
chr1:17352018(-) A-I      intronic
chr1:17366996(-) A-I      intronic
chr1:17366080(-) A-I      intronic
chr1:17371965(-) A-I      intronic
chr1:17371917(-) A-I      intronic
chr1:17362233(-) A-I      intronic
chr1:17366067(-) A-I      intronic
chr1:17346372(-) A-I      intronic
chr1:17371887(-) A-I      intronic
chr1:17372011(-) A-I      intronic
chr1:17364657(-) A-I      intronic
chr1:17356517(-) A-I      intronic
chr1:17357341(-) A-I      intronic
chr1:17369133(-) A-I      intronic
chr1:17374316(-) A-I      intronic
chr1:17374232(-) A-I      intronic
chr1:17355899(-) A-I      intronic
chr1:17364108(-) A-I      intronic
chr1:17357314(-) A-I      intronic
chr1:17356747(-) A-I      intronic
chr1:17369187(-) A-I      intronic
chr1:17356601(-) A-I      intronic
chr1:17374441(-) A-I      intronic
chr1:17347885(-) A-I      intronic
chr1:17356572(-) A-I      intronic
chr1:17371045(-) A-I      intronic
chr1:17367064(-) A-I      intronic
chr1:17348237(-) A-I      intronic
chr1:17364512(-) A-I      intronic
chr1:17367053(-) A-I      intronic
chr1:17374134(-) A-I      intronic
chr1:17367088(-) A-I      intronic
chr1:17356307(-) A-I      intronic
chr1:17373411(-) A-I      intronic
chr1:17369160(-) A-I      intronic
chr1:17369242(-) A-I      intronic
chr1:17375481(-) A-I      intronic
chr1:17377059(-) A-I      intronic
chr1:17361170(-) A-I      intronic
chr1:17347933(-) A-I      intronic
chr1:17348128(-) A-I      intronic
chr1:17369186(-) A-I      intronic
chr1:17376256(-) A-I      intronic
chr1:17367015(-) A-I      intronic
chr1:17360721(-) A-I      intronic
chr1:17367457(-) A-I      intronic
chr1:17361078(-) A-I      intronic
chr1:17362243(-) A-I      intronic
chr1:17369204(-) A-I      intronic
chr1:17367433(-) A-I      intronic
chr1:17369070(-) A-I      intronic
chr1:17369624(-) A-I      intronic
chr1:17376411(-) A-I      intronic
chr1:17367114(-) A-I      intronic
chr1:17346297(-) A-I      intronic
chr1:17369216(-) A-I      intronic
chr1:17362153(-) A-I      intronic
chr1:17361148(-) A-I      intronic
chr1:17369038(-) A-I      intronic
chr1:17376279(-) A-I      intronic
chr1:17356777(-) A-I      intronic
chr1:17366112(-) A-I      intronic
chr1:17358756(-) A-I      intronic
chr1:17356023(-) A-I      intronic
chr1:17364388(-) A-I      intronic
chr1:17365823(-) A-I      intronic
chr1:17348177(-) A-I      intronic
chr1:17356326(-) A-I      intronic
chr1:17366980(-) A-I      intronic
chr1:17357380(-) A-I      intronic
chr1:17355725(-) A-I      intronic
chr1:17347875(-) A-I      intronic
chr1:17371014(-) A-I      intronic
chr1:17346266(-) A-I      intronic
chr1:17376998(-) A-I      intronic
chr1:17367022(-) A-I      intronic
chr1:17363395(-) A-I      intronic
chr1:17364551(-) A-I      intronic
chr1:17375302(-) A-I      intronic
chr1:17362152(-) A-I      intronic
chr1:17369234(-) A-I      intronic
chr1:17369047(-) A-I      intronic
chr1:17347815(-) A-I      intronic
chr1:17368045(-) A-I      intronic
chr1:17348068(-) A-I      intronic
chr1:17356089(-) A-I      intronic
chr1:17364103(-) A-I      intronic
chr1:17356504(-) A-I      intronic
chr1:17373444(-) A-I      intronic
chr1:17356812(-) A-I      intronic
chr1:17374006(-) A-I      intronic
chr1:17358887(-) A-I      intronic
chr1:17369674(-) A-I      intronic
chr1:17376065(-) A-I      intronic
chr1:17365845(-) A-I      intronic
chr1:17357317(-) A-I      intronic
chr1:17369104(-) A-I      intronic
chr1:17373915(-) A-I      intronic
chr1:17367223(-) A-I      intronic
chr1:17360786(-) A-I      intronic
chr1:17371864(-) A-I      intronic
chr1:17360780(-) A-I      intronic
chr1:17347931(-) A-I      intronic
chr1:17369675(-) A-I      intronic
chr1:17369659(-) A-I      intronic
chr1:17355837(-) A-I      intronic
chr1:17367025(-) A-I      intronic
chr1:17346264(-) A-I      intronic
chr1:17361076(-) A-I      intronic
chr1:17357381(-) A-I      intronic
chr1:17371096(-) A-I      intronic
chr1:17356462(-) A-I      intronic
chr1:17369161(-) A-I      intronic
chr1:17373606(-) A-I      intronic
chr1:17364464(-) A-I      intronic
chr1:17368149(-) A-I      intronic
chr1:17356291(-) A-I      intronic
chr1:17369625(-) A-I      intronic
chr1:17367422(-) A-I      intronic
chr1:17367578(-) A-I      intronic
chr1:17361168(-) A-I      intronic
chr1:17362242(-) A-I      intronic
chr1:17364203(-) A-I      intronic
chr1:17362945(-) A-I      intronic
chr1:17375752(-) A-I      intronic
chr1:17374095(-) A-I      intronic
chr1:17362317(-) A-I      intronic
chr1:17358820(-) A-I      intronic
chr1:17369107(-) A-I      intronic
chr1:17369728(-) A-I      intronic
chr1:17369022(-) A-I      intronic
chr1:17367162(-) A-I      intronic
chr1:17376324(-) A-I      intronic
chr1:17358821(-) A-I      intronic
chr1:17356534(-) A-I      intronic
chr1:17374009(-) A-I      intronic
chr1:17356575(-) A-I      intronic
chr1:17356032(-) A-I      intronic
chr1:17376404(-) A-I      intronic
chr1:17358762(-) A-I      intronic
chr1:17364329(-) A-I      intronic
chr1:17371039(-) A-I      intronic
chr1:17366006(-) A-I      intronic
chr1:17368522(-) A-I      intronic
chr1:17356600(-) A-I      intronic
chr1:17367117(-) A-I      intronic
chr1:17364675(-) A-I      intronic
chr1:17362272(-) A-I      intronic
chr1:17369151(-) A-I      intronic
chr1:17376360(-) A-I      intronic
chr1:17376987(-) A-I      intronic
chr1:17370958(-) A-I      intronic
chr1:17367461(-) A-I      intronic
chr1:17353120(-) A-I      intronic
chr1:17356492(-) A-I      intronic
chr1:17367177(-) A-I      intronic
chr1:17365995(-) A-I      intronic
chr1:17376246(-) A-I      intronic
chr1:17375860(-) A-I      intronic
chr1:17373739(-) A-I      intronic
chr1:17365829(-) A-I      intronic
chr1:17362168(-) A-I      intronic
chr1:17363833(-) A-I      intronic
chr1:17352864(-) A-I      intronic
chr1:17346307(-) A-I      intronic
chr1:17370957(-) A-I      intronic
chr1:17368514(-) A-I      intronic
chr1:17369028(-) A-I      intronic
chr1:17358886(-) A-I      intronic
chr1:17355817(-) A-I      intronic
chr1:17346267(-) A-I      intronic
chr1:17367061(-) A-I      intronic
chr1:17348157(-) A-I      intronic
chr1:17373364(-) A-I      intronic
chr1:17376252(-) A-I      intronic
chr1:17376978(-) A-I      intronic
chr1:17376361(-) A-I      intronic
chr1:17364486(-) A-I      intronic
chr1:17364534(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SDHB
chr1:17347931(-) A-G intron -    22484847
chr1:17347933(-) A-G intron -    22484847
chr1:17348155(-) T-C intron -    22484847
chr1:17356572(-) A-G intron -    22484847
chr1:17356600(-) A-G intron -    22484847
chr1:17357380(-) A-G intron -    22484847
chr1:17357381(-) A-G intron -    22484847
chr1:17361076(-) A-G intron -    22484847
chr1:17362153(-) A-G intron -    22484847
chr1:17362168(-) A-G intron -    22484847
chr1:17362242(-) A-G intron -    22484847
chr1:17362272(-) A-G intron -    22484847
chr1:17362317(-) A-G intron -    22484847
chr1:17365829(-) A-G intron -    22484847
chr1:17365845(-) A-G intron -    22484847
chr1:17366006(-) A-G intron -    22484847
chr1:17366112(-) A-G intron -    22484847
chr1:17367015(-) A-G intron -    22484847
chr1:17367578(-) A-G intron -    22484847
chr1:17369022(-) A-G intron -    22484847
chr1:17369028(-) A-G intron -    22484847
chr1:17369047(-) A-G intron -    22484847
chr1:17369161(-) A-G intron -    22484847
chr1:17369728(-) A-G intron -    22484847
chr1:17371864(-) A-G intron -    22484847
chr1:17372002(-) C-A intron -    22484847
chr1:17373364(-) A-G intron -    22484847
chr1:17373444(-) A-G intron -    22484847
chr1:17376360(-) A-G intron -    22484847
chr1:17376987(-) A-G intron -    22484847
chr1:17377059(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SDHB
chr1:17349113-17349114(-) m6A CDS//exon       26404942
chr1:17349124-17349125(-) m6A CDS//exon       26404942
chr1:17349160-17349161(-) m6A CDS//exon       26404942//27773535
chr1:17354246-17354247(-) m6A CDS//exon       26404942
chr1:17359570-17359571(-) Am CDS//exon       -
chr1:17371306-17371307(-) m6A 5'UTR//CDS//exon       -
chr1:17371312-17371313(-) m6A 5'UTR//CDS//exon       -
chr1:17371364-17371365(-) m6A 5'UTR//CDS//exon       24284625//22575960
chr1:17378763-17378764(-) m6A 5'UTR//intron       24284625//27773536
chr1:17380569-17380570(-) m6A 5'UTR       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SDHB
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: SDHB

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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