Detail Information

Basic Information:


  VIRBase ID:  

VHID00034738

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 PPARG
miRBase
Accession/Entrez ID		 zikv-mir-4 5468
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CIMT1//GLM1//NR1C3//PPARG1//PPARG2//PPARG5//PPARgamma

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PPARG
chr3:12429522(+) A-I      intronic
chr3:12455882(+) A-I      intronic
chr3:12455896(+) A-I      intronic
chr3:12455260(+) A-I      intronic
chr3:12429540(+) A-I      intronic
chr3:12455906(+) A-I      intronic
chr3:12455256(+) A-I      intronic
chr3:12429525(+) A-I      intronic
chr3:12340447(+) A-I      intronic
chr3:12432372(+) A-I      intronic
chr3:12455883(+) A-I      intronic
chr3:12455884(+) A-I      intronic
chr3:12337504(+) A-I      intronic
chr3:12464250(+) A-I      intronic
chr3:12464287(+) A-I      intronic
chr3:12439183(+) A-I      intronic
chr3:12337588(+) A-I      intronic
chr3:12459730(+) A-I      intronic
chr3:12455305(+) A-I      intronic
chr3:12455304(+) A-I      intronic
chr3:12431375(+) A-I      intronic
chr3:12455235(+) A-I      intronic
chr3:12455230(+) A-I      intronic
chr3:12457819(+) A-I      intronic
chr3:12444671(+) A-I      intronic
chr3:12455053(+) A-I      intronic
chr3:12439185(+) A-I      intronic
chr3:12336203(+) A-I      intronic
chr3:12336204(+) A-I      intronic
chr3:12336238(+) A-I      intronic
chr3:12336347(+) A-I      intronic
chr3:12337077(+) A-I      intronic
chr3:12337106(+) A-I      intronic
chr3:12337112(+) A-I      intronic
chr3:12438036(+) A-I      intronic
chr3:12438096(+) A-I      intronic
chr3:12438110(+) A-I      intronic
chr3:12438214(+) A-I      intronic
chr3:12439161(+) A-I      intronic
chr3:12337188(+) A-I      intronic
chr3:12337197(+) A-I      intronic
chr3:12337223(+) A-I      intronic
chr3:12337248(+) A-I      intronic
chr3:12337589(+) A-I      intronic
chr3:12337593(+) A-I      intronic
chr3:12337605(+) A-I      intronic
chr3:12337624(+) A-I      intronic
chr3:12337630(+) A-I      intronic
chr3:12337636(+) A-I      intronic
chr3:12337640(+) A-I      intronic
chr3:12337657(+) A-I      intronic
chr3:12337741(+) A-I      intronic
chr3:12344905(+) A-I      intronic
chr3:12344974(+) A-I      intronic
chr3:12349700(+) A-I      intronic
chr3:12349716(+) A-I      intronic
chr3:12349868(+) A-I      intronic
chr3:12359612(+) A-I      intronic
chr3:12359614(+) A-I      intronic
chr3:12362259(+) A-I      intronic
chr3:12362265(+) A-I      intronic
chr3:12362272(+) A-I      intronic
chr3:12362285(+) A-I      intronic
chr3:12364456(+) A-I      intronic
chr3:12364462(+) A-I      intronic
chr3:12364486(+) A-I      intronic
chr3:12364540(+) A-I      intronic
chr3:12396663(+) A-I      intronic
chr3:12396671(+) A-I      intronic
chr3:12401392(+) A-I      intronic
chr3:12401393(+) A-I      intronic
chr3:12404647(+) A-I      intronic
chr3:12404654(+) A-I      intronic
chr3:12337257(+) A-I      intronic
chr3:12431118(+) A-I      intronic
chr3:12431156(+) A-I      intronic
chr3:12431188(+) A-I      intronic
chr3:12431372(+) A-I      intronic
chr3:12431378(+) A-I      intronic
chr3:12337496(+) A-I      intronic
chr3:12432171(+) A-I      intronic
chr3:12432359(+) A-I      intronic
chr3:12438078(+) A-I      intronic
chr3:12457798(+) A-I      intronic
chr3:12420631(+) A-I      intronic
chr3:12445064(+) A-I      intronic
chr3:12404457(+) A-I      intronic
chr3:12388603(+) A-I      intronic
chr3:12410835(+) A-I      intronic
chr3:12432276(+) A-I      intronic
chr3:12464391(+) A-I      intronic
chr3:12366523(+) A-I      intronic
chr3:12459683(+) A-I      intronic
chr3:12438085(+) A-I      intronic
chr3:12438167(+) A-I      intronic
chr3:12337586(+) A-I      intronic
chr3:12459707(+) A-I      intronic
chr3:12337631(+) A-I      intronic
chr3:12432286(+) A-I      intronic
chr3:12438095(+) A-I      intronic
chr3:12344835(+) A-I      intronic
chr3:12364356(+) A-I      intronic
chr3:12409101(+) A-I      intronic
chr3:12383287(+) A-I      intronic
chr3:12459578(+) A-I      intronic
chr3:12401434(+) A-I      intronic
chr3:12382602(+) A-I      intronic
chr3:12337666(+) A-I      intronic
chr3:12444897(+) A-I      intronic
chr3:12364362(+) A-I      intronic
chr3:12438077(+) A-I      intronic
chr3:12409099(+) A-I      intronic
chr3:12459715(+) A-I      intronic
chr3:12337552(+) A-I      intronic
chr3:12337679(+) A-I      intronic
chr3:12364332(+) A-I      intronic
chr3:12464130(+) A-I      intronic
chr3:12337672(+) A-I      intronic
chr3:12416010(+) A-I      intronic
chr3:12395990(+) A-I      intronic
chr3:12416630(+) A-I      intronic
chr3:12431317(+) A-I      intronic
chr3:12337572(+) A-I      intronic
chr3:12352236(+) A-I      intronic
chr3:12432364(+) A-I      intronic
chr3:12420635(+) A-I      intronic
chr3:12410844(+) A-I      intronic
chr3:12337653(+) A-I      intronic
chr3:12438094(+) A-I      intronic
chr3:12444990(+) A-I      intronic
chr3:12438107(+) A-I      intronic
chr3:12349758(+) A-I      intronic
chr3:12337595(+) A-I      intronic
chr3:12431157(+) A-I      intronic
chr3:12416628(+) A-I      intronic
chr3:12438222(+) A-I      intronic
chr3:12337671(+) A-I      intronic
chr3:12337601(+) A-I      intronic
chr3:12337555(+) A-I      intronic
chr3:12337598(+) A-I      intronic
chr3:12404693(+) A-I      intronic
chr3:12438121(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PPARG
chr3:12337130(+) A-G intron -    22484847
chr3:12337595(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PPARG
chr3:12421358-12421359(+) m6A 3'UTR//CDS//exon       26404942
chr3:12421375-12421376(+) m6A 3'UTR//CDS//exon       26404942
chr3:12421413-12421414(+) m6A 3'UTR//CDS//exon       26404942
chr3:12458261-12458262(+) m6A 3'UTR//CDS//intron       22608085
chr3:12475432-12475433(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr3:12475441-12475442(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22608085
chr3:12475480-12475481(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr3:12475531-12475532(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr3:12475538-12475539(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr3:12475553-12475554(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr3:12475590-12475591(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr3:12475633-12475634(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr3:12475795-12475796(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PPARG
Cytoplasm ccRCC tissue     31090452
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: PPARG

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

Starting a new search, please wait ...