Detail Information

Basic Information:


  VIRBase ID:  

VHID00033901

  Virus:  

Zika virus (ZIKV)

  Host:  

Homo sapiens

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol zikv-mir-4 HCLS1
miRBase
Accession/Entrez ID		 zikv-mir-4 3059
Organism Zika virus (ZIKV) Homo sapiens
Category miRNA mRNA
Alias - CTTNL//HS1//lckBP1//p75

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HCLS1
chr3:121370566(-) A-I      intronic
chr3:121359604(-) A-I      intronic
chr3:121361498(-) A-I      intronic
chr3:121356736(-) A-I      intronic
chr3:121368198(-) A-I      intronic
chr3:121368275(-) A-I      intronic
chr3:121368285(-) A-I      intronic
chr3:121368309(-) A-I      intronic
chr3:121368333(-) A-I      intronic
chr3:121369733(-) A-I      intronic
chr3:121369742(-) A-I      intronic
chr3:121370446(-) A-I      intronic
chr3:121370534(-) A-I      intronic
chr3:121371235(-) A-I      intronic
chr3:121371309(-) A-I      intronic
chr3:121371338(-) A-I      intronic
chr3:121361561(-) A-I      intronic
chr3:121374788(-) A-I      intronic
chr3:121374977(-) A-I      intronic
chr3:121356520(-) A-I      intronic
chr3:121356610(-) A-I      intronic
chr3:121356701(-) A-I      intronic
chr3:121356707(-) A-I      intronic
chr3:121356720(-) A-I      intronic
chr3:121356982(-) A-I      intronic
chr3:121357113(-) A-I      intronic
chr3:121357128(-) A-I      intronic
chr3:121357189(-) A-I      intronic
chr3:121358434(-) A-I      intronic
chr3:121371418(-) A-I      intronic
chr3:121369719(-) A-I      intronic
chr3:121357137(-) A-I      intronic
chr3:121357196(-) A-I      intronic
chr3:121366095(-) A-I      intronic
chr3:121357793(-) A-I      intronic
chr3:121368363(-) A-I      intronic
chr3:121370381(-) A-I      intronic
chr3:121370485(-) A-I      intronic
chr3:121358472(-) A-I      intronic
chr3:121356700(-) A-I      intronic
chr3:121357109(-) A-I      intronic
chr3:121368277(-) A-I      intronic
chr3:121371401(-) A-I      intronic
chr3:121371425(-) A-I      intronic
chr3:121376535(-) A-I      intronic
chr3:121356750(-) A-I      intronic
chr3:121369895(-) A-I      intronic
chr3:121374834(-) A-I      intronic
chr3:121358498(-) A-I      intronic
chr3:121357000(-) A-I      intronic
chr3:121366079(-) A-I      intronic
chr3:121374928(-) A-I      intronic
chr3:121374860(-) A-I      intronic
chr3:121370390(-) A-I      intronic
chr3:121371296(-) A-I      intronic
chr3:121357205(-) A-I      intronic
chr3:121369900(-) A-I      intronic
chr3:121370389(-) A-I      intronic
chr3:121368161(-) A-I      intronic
chr3:121354307(-) A-I      intronic
chr3:121369859(-) A-I      intronic
chr3:121361566(-) A-I      intronic
chr3:121369740(-) A-I      intronic
chr3:121370299(-) A-I      intronic
chr3:121356599(-) A-I      intronic
chr3:121356671(-) A-I      intronic
chr3:121369919(-) A-I      intronic
chr3:121368193(-) A-I      intronic
chr3:121356565(-) A-I      intronic
chr3:121356958(-) A-I      intronic
chr3:121366109(-) A-I      intronic
chr3:121356634(-) A-I      intronic
chr3:121368264(-) A-I      intronic
chr3:121371284(-) A-I      intronic
chr3:121370518(-) A-I      intronic
chr3:121368355(-) A-I      intronic
chr3:121374840(-) A-I      intronic
chr3:121357073(-) A-I      intronic
chr3:121370526(-) A-I      intronic
chr3:121368327(-) A-I      intronic
chr3:121357183(-) A-I      intronic
chr3:121371322(-) A-I      intronic
chr3:121356953(-) A-I      intronic
chr3:121374938(-) A-I      intronic
chr3:121358520(-) A-I      intronic
chr3:121358450(-) A-I      intronic
chr3:121370450(-) A-I      intronic
chr3:121357771(-) A-I      intronic
chr3:121371283(-) A-I      intronic
chr3:121357810(-) A-I      intronic
chr3:121369817(-) A-I      intronic
chr3:121370540(-) A-I      intronic
chr3:121370444(-) A-I      intronic
chr3:121369741(-) A-I      intronic
chr3:121371463(-) A-I      intronic
chr3:121356998(-) A-I      intronic
chr3:121358469(-) A-I      intronic
chr3:121361511(-) A-I      intronic
chr3:121357006(-) A-I      intronic
chr3:121370408(-) A-I      intronic
chr3:121356960(-) A-I      intronic
chr3:121370443(-) A-I      intronic
chr3:121374810(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED HCLS1
chr3:121356565(-) A-I intron -    22327324
chr3:121356744(-) A-I intron -    22327324
chr3:121357000(-) A-I intron -    22327324
chr3:121357129(-) A-I intron -    22327324
chr3:121369899(-) A-I intron -    22327324
chr3:121369900(-) A-I intron -    22327324
chr3:121370526(-) A-I intron -    22327324
chr3:121360951(-) A-T intron -    22484847
chr3:121356565(-) A-G intron -    22484847
chr3:121356590(-) A-G intron -    22484847
chr3:121356671(-) A-G intron -    22484847
chr3:121356700(-) A-G intron -    22484847
chr3:121356744(-) A-G intron -    22484847
chr3:121356761(-) A-G intron -    22484847
chr3:121356953(-) A-G intron -    22484847
chr3:121356958(-) A-G intron -    22484847
chr3:121356972(-) A-G intron -    22484847
chr3:121357000(-) A-G intron -    22484847
chr3:121357129(-) A-G intron -    22484847
chr3:121357137(-) A-G intron -    22484847
chr3:121357182(-) A-G intron -    22484847
chr3:121357183(-) A-G intron -    22484847
chr3:121357793(-) A-G intron -    22484847
chr3:121357810(-) A-G intron -    22484847
chr3:121358469(-) A-G intron -    22484847
chr3:121358472(-) A-G intron -    22484847
chr3:121358512(-) A-G intron -    22484847
chr3:121358520(-) A-G intron -    22484847
chr3:121361566(-) A-G intron -    22484847
chr3:121368161(-) A-G intron -    22484847
chr3:121368193(-) A-G intron -    22484847
chr3:121368264(-) A-G intron -    22484847
chr3:121368277(-) A-G intron -    22484847
chr3:121368327(-) A-G intron -    22484847
chr3:121368349(-) A-G intron -    22484847
chr3:121368354(-) A-G intron -    22484847
chr3:121368355(-) A-G intron -    22484847
chr3:121368363(-) A-G intron -    22484847
chr3:121369728(-) A-G intron -    22484847
chr3:121369741(-) A-G intron -    22484847
chr3:121369895(-) A-G intron -    22484847
chr3:121369899(-) A-G intron -    22484847
chr3:121369900(-) A-G intron -    22484847
chr3:121369919(-) A-G intron -    22484847
chr3:121370381(-) A-G intron -    22484847
chr3:121370386(-) A-G intron -    22484847
chr3:121370389(-) A-G intron -    22484847
chr3:121370399(-) A-G intron -    22484847
chr3:121370408(-) A-G intron -    22484847
chr3:121370450(-) A-G intron -    22484847
chr3:121370490(-) G-A intron -    22484847
chr3:121370518(-) A-G intron -    22484847
chr3:121370526(-) A-G intron -    22484847
chr3:121370539(-) A-G intron -    22484847
chr3:121370540(-) A-G intron -    22484847
chr3:121370556(-) A-G intron -    22484847
chr3:121371283(-) A-G intron -    22484847
chr3:121371284(-) A-G intron -    22484847
chr3:121371296(-) A-G intron -    22484847
chr3:121371322(-) A-G intron -    22484847
chr3:121371352(-) A-G intron -    22484847
chr3:121371401(-) A-G intron -    22484847
chr3:121371406(-) A-G intron -    22484847
chr3:121371463(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HCLS1
chr3:121350728-121350729(-) m6A CDS//exon       -
chr3:121351231-121351232(-) m6A CDS//exon       26404942
chr3:121351242-121351243(-) m6A CDS//exon       26404942
chr3:121351264-121351265(-) m6A 3'UTR//CDS//exon       26404942
chr3:121351376-121351377(-) m6A 3'UTR//CDS//exon       26404942
chr3:121351924-121351925(-) m6A 3'UTR//CDS//exon       -
chr3:121355293-121355294(-) m6A CDS//exon       -
chr3:121356008-121356009(-) m6A 3'UTR//CDS//exon//intron       -
chr3:121356051-121356052(-) m6A 3'UTR//CDS//exon//intron       -
chr3:121363443-121363444(-) m6A exon//intron       27371828
chr3:121363465-121363466(-) m6A exon//intron       27371828
chr3:121363543-121363544(-) m6A exon//intron       27371828
chr3:121363561-121363562(-) m6A exon//intron       27371828
chr3:121363566-121363567(-) m6A exon//intron       27371828
chr3:121363668-121363669(-) m6A 3'UTR//CDS//exon       -
chr3:121363677-121363678(-) m6A 3'UTR//CDS//exon       -
chr3:121366169-121366170(-) m6A 3'UTR//CDS//exon       27371828
chr3:121366178-121366179(-) m6A 3'UTR//CDS//exon       27371828
chr3:121366277-121366278(-) m6A CDS//exon//intron       27371828
chr3:121376109-121376110(-) m6A exon//intron       27371828
chr3:121376133-121376134(-) m6A CDS//exon       27371828
chr3:121376159-121376160(-) m6A CDS//exon       27371828
chr3:121376839-121376840(-) m6A exon//intron       27371828
chr3:121376911-121376912(-) m6A exon//intron       27371828
chr3:121377129-121377130(-) m6A CDS//exon       24981863//27371828
chr3:121377148-121377149(-) m6A CDS//exon       24981863//27371828
chr3:121379687-121379688(-) m6A 5'UTR//exon       24981863//28052920//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate HCLS1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: zikv-mir-4
Interactor2: HCLS1

Evidence Support:


Prediction-Evidence miRanda
Support Database ZIKV-CDB

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